Gm25878 Gene Detail

Summary

• Symbol
  Gm25878
• Name
  predicted gene, 25878

• Feature Type
  snoRNA gene
• IDs
  MGI:5455655
  NCBI Gene: 115486178
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:166905393-166905485 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455655	snoRNA gene	Chr2:166905393-166905485 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039066	snoRNA gene	Chr2:172763028-172763120 (+)
A/J	MGP_AJ_G0039062	snoRNA gene	Chr2:165667454-165667546 (+)
AKR/J	MGP_AKRJ_G0038993	snoRNA gene	Chr2:170598424-170598516 (+)
BALB/cJ	MGP_BALBcJ_G0039045	snoRNA gene	Chr2:166016378-166016470 (+)
C3H/HeJ	MGP_C3HHeJ_G0038706	snoRNA gene	Chr2:170966610-170966702 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039593	snoRNA gene	Chr2:177781440-177781532 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036305	snoRNA gene	Chr2:158995266-158995358 (+)
CAST/EiJ	MGP_CASTEiJ_G0037844	snoRNA gene	Chr2:171425178-171425270 (+)
CBA/J	MGP_CBAJ_G0038677	snoRNA gene	Chr2:184303738-184303830 (+)
DBA/2J	MGP_DBA2J_G0038863	snoRNA gene	Chr2:164788361-164788453 (+)
FVB/NJ	MGP_FVBNJ_G0038818	snoRNA gene	Chr2:163294037-163294129 (+)
LP/J	MGP_LPJ_G0038907	snoRNA gene	Chr2:172786864-172786956 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038819	snoRNA gene	Chr2:187706633-187706725 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039693	snoRNA gene	Chr2:170507096-170507188 (+)
PWK/PhJ	MGP_PWKPhJ_G0037531	snoRNA gene	Chr2:164441310-164441402 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037280	snoRNA gene	Chr2:169455763-169455855 (+)
WSB/EiJ	MGP_WSBEiJ_G0038070	snoRNA gene	Chr2:171409155-171409247 (+)

Homology

• Gene Tree
  Gm25878
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000077515 (Evidence)
• NCBI Gene
  115486178

Representative Sequences			Length	Strain/Species
genomic	115486178	NCBI Gene Model | MGI Sequence Detail	93	C57BL/6J
transcript	XR_004941231	RefSeq | MGI Sequence Detail	93	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm25878:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21790	Chr2:166905133-166905147 (+)	-253 bp