Gm25921 Gene Detail

Summary

• Symbol
  Gm25921
• Name
  predicted gene, 25921

• Feature Type
  snoRNA gene
• IDs
  MGI:5455698
  NCBI Gene: 115486033
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:25525086-25525222 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455698	snoRNA gene	Chr17:25525086-25525222 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038889	snoRNA gene	Chr17:24362630-24362766 (+)
A/J	MGP_AJ_G0038885	snoRNA gene	Chr17:23678635-23678771 (+)
AKR/J	MGP_AKRJ_G0038819	snoRNA gene	Chr17:23773664-23773800 (+)
BALB/cJ	MGP_BALBcJ_G0038867	snoRNA gene	Chr17:23881289-23881425 (+)
C3H/HeJ	MGP_C3HHeJ_G0038531	snoRNA gene	Chr17:24150903-24151039 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039416	snoRNA gene	Chr17:25424495-25424631 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036151	snoRNA gene	Chr17:21138669-21138805 (+)
CAST/EiJ	MGP_CASTEiJ_G0037672	snoRNA gene	Chr17:24007230-24007366 (+)
CBA/J	MGP_CBAJ_G0038503	snoRNA gene	Chr17:26288251-26288387 (+)
DBA/2J	MGP_DBA2J_G0038691	snoRNA gene	Chr17:23263097-23263233 (+)
FVB/NJ	MGP_FVBNJ_G0038644	snoRNA gene	Chr17:22992710-22992846 (+)
LP/J	MGP_LPJ_G0038731	snoRNA gene	Chr17:24658302-24658438 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038643	snoRNA gene	Chr17:25944772-25944908 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039518	snoRNA gene	Chr17:24058429-24058565 (+)
PWK/PhJ	MGP_PWKPhJ_G0037357	snoRNA gene	Chr17:22026134-22026270 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037113	snoRNA gene	Chr17:22144448-22144584 (+)
WSB/EiJ	MGP_WSBEiJ_G0037900	snoRNA gene	Chr17:24129243-24129379 (+)

Homology

• Gene Tree
  Gm25921
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm25921
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000088930 (Evidence)
• NCBI Gene
  115486033

Representative Sequences			Length	Strain/Species
genomic	115486033	NCBI Gene Model | MGI Sequence Detail	137	C57BL/6J
transcript	XR_004939751	RefSeq | MGI Sequence Detail	137	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044