Gm26121 Gene Detail

Summary

• Symbol
  Gm26121
• Name
  predicted gene, 26121

• Feature Type
  snRNA gene
• IDs
  MGI:5455898
  NCBI Gene: 115487853
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:72772618-72772779 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  68 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455898	snRNA gene	Chr11:72772618-72772779 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037321	snRNA gene	Chr11:73539984-73540145 (+)
A/J	MGP_AJ_G0037307	snRNA gene	Chr11:70784029-70784190 (+)
AKR/J	MGP_AKRJ_G0037253	snRNA gene	Chr11:72938729-72938890 (+)
BALB/cJ	MGP_BALBcJ_G0037298	snRNA gene	Chr11:71084880-71085041 (+)
C3H/HeJ	MGP_C3HHeJ_G0036981	snRNA gene	Chr11:72902613-72902774 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037812	snRNA gene	Chr11:75764228-75764389 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034820	snRNA gene	Chr11:67595719-67595877 (+)
CAST/EiJ	MGP_CASTEiJ_G0036159	snRNA gene	Chr11:73276868-73277029 (+)
CBA/J	MGP_CBAJ_G0036953	snRNA gene	Chr11:79137051-79137212 (+)
DBA/2J	MGP_DBA2J_G0037131	snRNA gene	Chr11:70412824-70412985 (+)
FVB/NJ	MGP_FVBNJ_G0037079	snRNA gene	Chr11:69956621-69956782 (+)
LP/J	MGP_LPJ_G0037179	snRNA gene	Chr11:74039898-74040059 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037089	snRNA gene	Chr11:79660445-79660606 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037930	snRNA gene	Chr11:73139805-73139966 (+)
PWK/PhJ	MGP_PWKPhJ_G0035856	snRNA gene	Chr11:71047534-71047695 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035655	snRNA gene	Chr11:72850894-72851055 (+)
WSB/EiJ	MGP_WSBEiJ_G0036370	snRNA gene	Chr11:72878973-72879134 (+)

Homology

• Gene Tree
  Gm26121
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm26121
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000065298 (Evidence)
• NCBI Gene
  115487853

Representative Sequences			Length	Strain/Species
genomic	115487853	NCBI Gene Model | MGI Sequence Detail	162	C57BL/6J
transcript	XR_004937306	RefSeq | MGI Sequence Detail	162	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm26121:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102859	Chr11:72772617-72772618 (+)	0 bp