Gm26408 Gene Detail

Summary

• Symbol
  Gm26408
• Name
  predicted gene, 26408

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:5456185
  NCBI Gene: 115486158
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:71830012-71830136 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5456185	snoRNA gene	Chr2:71830010-71830136 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039015	snoRNA gene	Chr2:72168607-72168733 (-)
A/J	MGP_AJ_G0039010	snoRNA gene	Chr2:69335192-69335318 (-)
AKR/J	MGP_AKRJ_G0038945	snoRNA gene	Chr2:71255726-71255852 (-)
BALB/cJ	MGP_BALBcJ_G0038993	snoRNA gene	Chr2:69533573-69533699 (-)
C3H/HeJ	MGP_C3HHeJ_G0038657	snoRNA gene	Chr2:71454541-71454667 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039543	snoRNA gene	Chr2:74347682-74347808 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036260	snoRNA gene	Chr2:66552502-66552628 (-)
CAST/EiJ	MGP_CASTEiJ_G0037797	snoRNA gene	Chr2:71658151-71658277 (-)
CBA/J	MGP_CBAJ_G0038628	snoRNA gene	Chr2:77061158-77061284 (-)
DBA/2J	MGP_DBA2J_G0038817	snoRNA gene	Chr2:68968047-68968173 (-)
FVB/NJ	MGP_FVBNJ_G0038769	snoRNA gene	Chr2:68375679-68375805 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0038769	snoRNA gene	Chr2:79037568-79037694 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039643	snoRNA gene	Chr2:71343135-71343261 (-)
PWK/PhJ	MGP_PWKPhJ_G0037481	snoRNA gene	Chr2:68850020-68850146 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037235	snoRNA gene	Chr2:71532807-71532933 (-)
WSB/EiJ	MGP_WSBEiJ_G0038025	snoRNA gene	Chr2:71791056-71791182 (-)

Homology

• Gene Tree
  Gm26408
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  5
• Targeted
  5
• Genomic Mutations
  5 involving Gm26408
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000088297 (Evidence)
• NCBI Gene
  115486158

Representative Sequences			Length	Strain/Species
genomic	115486158	NCBI Gene Model | MGI Sequence Detail	125	C57BL/6J

References

• Summaries
  All 14

  Phenotypes 11
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729