Gm26519 Gene Detail

Summary

• Symbol
  Gm26519
• Name
  predicted gene, 26519

• Feature Type
  lncRNA gene
• IDs
  MGI:5477013
  NCBI Gene: 102634580
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:105549111-105554836 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  272 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477013	lncRNA gene	Chr5:105549092-105554836 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006729	lincRNA gene	Chr5:107290391-107297154 (+)
A/J	MGP_AJ_G0006723	lincRNA gene	Chr5:103208545-103214218 (+)
AKR/J	MGP_AKRJ_G0006693	lincRNA gene	Chr5:106565869-106571415 (+)
BALB/cJ	MGP_BALBcJ_G0006698	lincRNA gene	Chr5:104353053-104358726 (+)
C3H/HeJ	MGP_C3HHeJ_G0006644	lincRNA gene	Chr5:106983228-106988901 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006863	lincRNA gene	Chr5:111772648-111779629 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006120	lincRNA gene	Chr5:98307862-98315054 (+)
CAST/EiJ	MGP_CASTEiJ_G0006567	lincRNA gene	Chr5:105872878-105878547 (+)
CBA/J	MGP_CBAJ_G0006625	lincRNA gene	Chr5:115480726-115486399 (+)
DBA/2J	MGP_DBA2J_G0006646	lincRNA gene	Chr5:103370008-103375678 (+)
FVB/NJ	MGP_FVBNJ_G0006670	lincRNA gene	Chr5:102089716-102095389 (+)
LP/J	MGP_LPJ_G0006730	lincRNA gene	Chr5:107906458-107912019 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006654	lincRNA gene	Chr5:120550655-120556297 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006866	lincRNA gene	Chr5:106091888-106099494 (+)
PWK/PhJ	MGP_PWKPhJ_G0006506	lincRNA gene	Chr5:101834292-101840459 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006412	lincRNA gene	Chr5:103575275-103580720 (+)
WSB/EiJ	MGP_WSBEiJ_G0006618	lincRNA gene	Chr5:106413428-106419096 (+)

Homology

• Gene Tree
  Gm26519
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm26519
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097237 (Evidence)
• NCBI Gene
  102634580

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097237	Ensembl Gene Model | MGI Sequence Detail	5726	C57BL/6J
transcript	ENSMUST00000181193	Ensembl | MGI Sequence Detail	2249	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm26519:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47675	Chr5:105548274-105548284 (+)	-832 bp