Gm26577 Gene Detail

Summary

• Symbol
  Gm26577
• Name
  predicted gene, 26577

• Feature Type
  lncRNA gene
• IDs
  MGI:5477071
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:21020993-21030273 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  304 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477071	lncRNA gene	Chr10:21020993-21030273 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002842	antisense lncRNA gene	Chr10:18939111-18949843 (+)
A/J	MGP_AJ_G0002819	antisense lncRNA gene	Chr10:18208987-18218269 (+)
AKR/J	MGP_AKRJ_G0002800	antisense lncRNA gene	Chr10:18533222-18542374 (+)
BALB/cJ	MGP_BALBcJ_G0002806	antisense lncRNA gene	Chr10:18275286-18284500 (+)
C3H/HeJ	MGP_C3HHeJ_G0002764	antisense lncRNA gene	Chr10:18859896-18870034 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002948	antisense lncRNA gene	Chr10:19418336-19427469 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002494	antisense lncRNA gene	Chr10:17188210-17197249 (+)
CAST/EiJ	MGP_CASTEiJ_G0002736	antisense lncRNA gene	Chr10:18778618-18787802 (+)
CBA/J	MGP_CBAJ_G0002759	antisense lncRNA gene	Chr10:20294507-20305508 (+)
DBA/2J	MGP_DBA2J_G0002766	antisense lncRNA gene	Chr10:18088140-18097503 (+)
FVB/NJ	MGP_FVBNJ_G0002786	antisense lncRNA gene	Chr10:17831452-17841507 (+)
LP/J	MGP_LPJ_G0002842	antisense lncRNA gene	Chr10:18736159-18745276 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002776	antisense lncRNA gene	Chr10:20517811-20527683 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002953	antisense lncRNA gene	Chr10:18521218-18530998 (+)
PWK/PhJ	MGP_PWKPhJ_G0002694	antisense lncRNA gene	Chr10:17989453-17998988 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002644	antisense lncRNA gene	Chr10:18693905-18702938 (+)
WSB/EiJ	MGP_WSBEiJ_G0002765	antisense lncRNA gene	Chr10:18620074-18630180 (+)

Homology

• Gene Tree
  Gm26577
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm26577
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097923 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097923	Ensembl Gene Model | MGI Sequence Detail	9281	C57BL/6J
transcript	ENSMUST00000180680	Ensembl | MGI Sequence Detail	2184	Not Applicable

References

• Summaries
  All 6

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm26577:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3158	Chr10:21021056-21021065 (+)	68 bp
Tssr92620	Chr10:21028737-21028743 (+)	7,747 bp