Gm26640 Gene Detail

Summary

• Symbol
  Gm26640
• Name
  predicted gene, 26640

• Feature Type
  lncRNA gene
• IDs
  MGI:5477134
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:72930219-72934230 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477134	lncRNA gene	Chr6:72930219-72934230 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006990	lincRNA gene	Chr6:73567108-73571118 (+)
A/J	MGP_AJ_G0006986	lincRNA gene	Chr6:70653614-70657621 (+)
AKR/J	MGP_AKRJ_G0006954	lincRNA gene	Chr6:72784044-72788052 (+)
BALB/cJ	MGP_BALBcJ_G0006962	lincRNA gene	Chr6:70713535-70717950 (+)
C3H/HeJ	MGP_C3HHeJ_G0006963	lincRNA gene	Chr6:111464645-111468648 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007125	lincRNA gene	Chr6:75475024-75479024 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006366	lincRNA gene	Chr6:69822638-69826645 (+)
CAST/EiJ	MGP_CASTEiJ_G0006820	lincRNA gene	Chr6:72651860-72655671 (+)
CBA/J	MGP_CBAJ_G0006887	lincRNA gene	Chr6:78575342-78579347 (+)
DBA/2J	MGP_DBA2J_G0006907	lincRNA gene	Chr6:70075882-70079890 (+)
FVB/NJ	MGP_FVBNJ_G0006931	lincRNA gene	Chr6:69473362-69477373 (+)
LP/J	MGP_LPJ_G0006991	lincRNA gene	Chr6:73462798-73466809 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006911	lincRNA gene	Chr6:81922230-81927536 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007130	lincRNA gene	Chr6:72604946-72608953 (+)
PWK/PhJ	MGP_PWKPhJ_G0006759	lincRNA gene	Chr6:69003938-69007994 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006669	lincRNA gene	Chr6:71354427-71358314 (+)
WSB/EiJ	MGP_WSBEiJ_G0006876	lincRNA gene	Chr6:72985779-72989791 (+)

Homology

• Gene Tree
  Gm26640
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  63
• Gene trapped
  62
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm26640
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097569 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097569	Ensembl Gene Model | MGI Sequence Detail	4012	C57BL/6J
transcript	ENSMUST00000180809	Ensembl | MGI Sequence Detail	3524	Not Applicable

References

• Summaries
  All 7

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)

TSS for Gm26640:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57167	Chr6:72932086-72932111 (+)	1,880 bp
Tssr57168	Chr6:72933672-72933692 (+)	3,463 bp