Gm26647 Gene Detail

Summary

• Symbol
  Gm26647
• Name
  predicted gene, 26647

• Feature Type
  lncRNA gene
• IDs
  MGI:5477141
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:37195508-37198990 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477141	lncRNA gene	Chr5:37195508-37198990 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004066	antisense lncRNA gene	Chr5:35375979-35379451 (-)
A/J	MGP_AJ_G0004047	antisense lncRNA gene	Chr5:34221280-34224762 (-)
AKR/J	MGP_AKRJ_G0004025	antisense lncRNA gene	Chr5:35513947-35517420 (-)
BALB/cJ	MGP_BALBcJ_G0004033	antisense lncRNA gene	Chr5:34719552-34723028 (-)
C3H/HeJ	MGP_C3HHeJ_G0003979	antisense lncRNA gene	Chr5:35511440-35514924 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004182	antisense lncRNA gene	Chr5:37294111-37297593 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003661	antisense lncRNA gene	Chr5:31943733-31947022 (-)
CAST/EiJ	MGP_CASTEiJ_G0003943	antisense lncRNA gene	Chr5:34660467-34663928 (-)
CBA/J	MGP_CBAJ_G0003973	antisense lncRNA gene	Chr5:38211727-38215216 (-)
DBA/2J	MGP_DBA2J_G0003988	antisense lncRNA gene	Chr5:34346292-34349768 (-)
FVB/NJ	MGP_FVBNJ_G0004007	antisense lncRNA gene	Chr5:33828523-33832006 (-)
LP/J	MGP_LPJ_G0004068	antisense lncRNA gene	Chr5:35836225-35839762 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003996	antisense lncRNA gene	Chr5:38940419-38943918 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004177	antisense lncRNA gene	Chr5:35002810-35006288 (-)
PWK/PhJ	MGP_PWKPhJ_G0003896	antisense lncRNA gene	Chr5:33530305-33533837 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003841	antisense lncRNA gene	Chr5:34471950-34475128 (-)
WSB/EiJ	MGP_WSBEiJ_G0003978	antisense lncRNA gene	Chr5:35088018-35091497 (-)

Homology

• Gene Tree
  Gm26647
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving Gm26647
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097686 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097686	Ensembl Gene Model | MGI Sequence Detail	3483	C57BL/6J
transcript	ENSMUST00000180816	Ensembl | MGI Sequence Detail	1255	Not Applicable

References

• Summaries
  All 19

  Diseases 1

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707