Gm26693 Gene Detail

Summary

• Symbol
  Gm26693
• Name
  predicted gene, 26693

• Feature Type
  lncRNA gene
• IDs
  MGI:5477187
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:33029118-33040671 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  429 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477187	lncRNA gene	Chr17:33029118-33040671 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003390	antisense lncRNA gene	Chr17:32693061-32704505 (+)
A/J	MGP_AJ_G0003367	antisense lncRNA gene	Chr17:31606278-31618473 (+)
AKR/J	MGP_AKRJ_G0003350	antisense lncRNA gene	Chr17:31908751-31921299 (+)
BALB/cJ	MGP_BALBcJ_G0003356	antisense lncRNA gene	Chr17:31706447-31718723 (+)
C3H/HeJ	MGP_C3HHeJ_G0003308	antisense lncRNA gene	Chr17:32313758-32325560 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003497	antisense lncRNA gene	Chr17:33801204-33812617 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003012	antisense lncRNA gene	Chr17:28872593-28884610 (+)
CAST/EiJ	MGP_CASTEiJ_G0003271	antisense lncRNA gene	Chr17:32408643-32422207 (+)
CBA/J	MGP_CBAJ_G0003304	antisense lncRNA gene	Chr17:35320220-35335414 (+)
DBA/2J	MGP_DBA2J_G0003311	antisense lncRNA gene	Chr17:30985942-30998701 (+)
FVB/NJ	MGP_FVBNJ_G0003329	antisense lncRNA gene	Chr17:30803485-30815309 (+)
LP/J	MGP_LPJ_G0003384	antisense lncRNA gene	Chr17:32895808-32910628 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003317	antisense lncRNA gene	Chr17:34308184-34322841 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003499	antisense lncRNA gene	Chr17:32270815-32288945 (+)
PWK/PhJ	MGP_PWKPhJ_G0003230	antisense lncRNA gene	Chr17:29906804-29918553 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003174	antisense lncRNA gene	Chr17:30252770-30267435 (+)
WSB/EiJ	MGP_WSBEiJ_G0003305	antisense lncRNA gene	Chr17:32288703-32305756 (+)

Homology

• Gene Tree
  Gm26693
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000097030 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097030	Ensembl Gene Model | MGI Sequence Detail	11554	C57BL/6J
transcript	ENSMUST00000181318	Ensembl | MGI Sequence Detail	1021	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26693:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143739	Chr17:33029091-33029121 (+)	-12 bp
Tssr5087	Chr17:33030565-33030567 (+)	1,448 bp