Gm26725 Gene Detail

Summary

• Symbol
  Gm26725
• Name
  predicted gene, 26725

• Feature Type
  lncRNA gene
• IDs
  MGI:5477219
  NCBI Gene: 102635521
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:66308555-66332288 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  835 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477219	lncRNA gene	Chr5:66308347-66332288 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004087	antisense lncRNA gene	Chr5:65866553-65890256 (+)
A/J	MGP_AJ_G0004068	antisense lncRNA gene	Chr5:63392317-63416379 (+)
AKR/J	MGP_AKRJ_G0004046	antisense lncRNA gene	Chr5:65432959-65459105 (+)
BALB/cJ	MGP_BALBcJ_G0004054	antisense lncRNA gene	Chr5:64085130-64108909 (+)
C3H/HeJ	MGP_C3HHeJ_G0004000	antisense lncRNA gene	Chr5:65753232-65778143 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004202	antisense lncRNA gene	Chr5:68582323-68610306 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003679	antisense lncRNA gene	Chr5:59455944-59480498 (+)
CAST/EiJ	MGP_CASTEiJ_G0003963	antisense lncRNA gene	Chr5:64895814-64922586 (+)
CBA/J	MGP_CBAJ_G0003994	antisense lncRNA gene	Chr5:70801405-70825237 (+)
DBA/2J	MGP_DBA2J_G0004009	antisense lncRNA gene	Chr5:63422594-63447040 (+)
FVB/NJ	MGP_FVBNJ_G0004028	antisense lncRNA gene	Chr5:62598878-62622860 (+)
LP/J	MGP_LPJ_G0004089	antisense lncRNA gene	Chr5:66359916-66385828 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004017	antisense lncRNA gene	Chr5:73633315-73661279 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004198	antisense lncRNA gene	Chr5:65085648-65111001 (+)
PWK/PhJ	MGP_PWKPhJ_G0003916	antisense lncRNA gene	Chr5:62423755-62448488 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003861	antisense lncRNA gene	Chr5:64443082-64470953 (+)
WSB/EiJ	MGP_WSBEiJ_G0003998	antisense lncRNA gene	Chr5:65318837-65342845 (+)

Homology

• Gene Tree
  Gm26725
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm26725
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  10

• Ensembl
  ENSMUSG00000097092 (Evidence)
• NCBI Gene
  102635521

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097092	Ensembl Gene Model | MGI Sequence Detail	23734	C57BL/6J
transcript	ENSMUST00000180652	Ensembl | MGI Sequence Detail	1113	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 22

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm26725:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46525	Chr5:66308128-66308153 (+)	-414 bp