Gm26771 Gene Detail

Summary

• Symbol
  Gm26771
• Name
  predicted gene, 26771

• Feature Type
  lncRNA gene
• IDs
  MGI:5477265
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:83681160-83697310 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  577 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477265	lncRNA gene	Chr3:83681160-83697310 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003768	antisense lncRNA gene	Chr3:83634046-83653080 (-)
A/J	MGP_AJ_G0003748	antisense lncRNA gene	Chr3:80884048-80900140 (-)
AKR/J	MGP_AKRJ_G0003725	antisense lncRNA gene	Chr3:82786241-82802319 (-)
BALB/cJ	MGP_BALBcJ_G0003737	antisense lncRNA gene	Chr3:80953656-80969752 (-)
C3H/HeJ	MGP_C3HHeJ_G0003684	antisense lncRNA gene	Chr3:83082978-83099038 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003878	antisense lncRNA gene	Chr3:86775764-86791856 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003382	antisense lncRNA gene	Chr3:76540134-76556686 (-)
CAST/EiJ	MGP_CASTEiJ_G0003647	antisense lncRNA gene	Chr3:83270308-83289461 (-)
CBA/J	MGP_CBAJ_G0003680	antisense lncRNA gene	Chr3:89689128-89709409 (-)
DBA/2J	MGP_DBA2J_G0003689	antisense lncRNA gene	Chr3:80405506-80421596 (-)
FVB/NJ	MGP_FVBNJ_G0003710	antisense lncRNA gene	Chr3:78684679-78700759 (-)
LP/J	MGP_LPJ_G0003769	antisense lncRNA gene	Chr3:84602285-84619930 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003698	antisense lncRNA gene	Chr3:96076068-96093513 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003879	antisense lncRNA gene	Chr3:82584499-82600595 (-)
PWK/PhJ	MGP_PWKPhJ_G0003604	antisense lncRNA gene	Chr3:80165702-80183305 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003546	antisense lncRNA gene	Chr3:81763372-81779439 (-)
WSB/EiJ	MGP_WSBEiJ_G0003683	antisense lncRNA gene	Chr3:82931194-82948804 (-)

Homology

• Gene Tree
  Gm26771
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm26771
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000097250 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097250	Ensembl Gene Model | MGI Sequence Detail	16151	C57BL/6J
transcript	ENSMUST00000180472	Ensembl | MGI Sequence Detail	1082	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm26771:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33831	Chr3:83697280-83697299 (-)	20 bp
Tssr33830	Chr3:83697247-83697268 (-)	52 bp
Tssr33829	Chr3:83681976-83681980 (-)	15,332 bp