Gm26787 Gene Detail

Summary

• Symbol
  Gm26787
• Name
  predicted gene, 26787

• Feature Type
  lncRNA gene
• IDs
  MGI:5477281
  NCBI Gene: 102637672
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:36679183-36693972 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  513 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477281	lncRNA gene	Chr9:36679157-36693973 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004616	antisense lncRNA gene	Chr9:34677002-34700126 (+)
A/J	MGP_AJ_G0004596	antisense lncRNA gene	Chr9:33785599-33801657 (+)
AKR/J	MGP_AKRJ_G0004580	antisense lncRNA gene	Chr9:34531344-34547225 (+)
BALB/cJ	MGP_BALBcJ_G0004581	antisense lncRNA gene	Chr9:33627554-33644373 (+)
C3H/HeJ	MGP_C3HHeJ_G0004530	antisense lncRNA gene	Chr9:34941169-34958497 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004730	antisense lncRNA gene	Chr9:35810660-35837066 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004181	antisense lncRNA gene	Chr9:32919537-32933987 (+)
CAST/EiJ	MGP_CASTEiJ_G0004488	antisense lncRNA gene	Chr9:34642799-34657173 (+)
CBA/J	MGP_CBAJ_G0004524	antisense lncRNA gene	Chr9:37030487-37069087 (+)
DBA/2J	MGP_DBA2J_G0004539	antisense lncRNA gene	Chr9:33837747-33854091 (+)
FVB/NJ	MGP_FVBNJ_G0004556	antisense lncRNA gene	Chr9:33094742-33112608 (+)
LP/J	MGP_LPJ_G0004620	antisense lncRNA gene	Chr9:34924646-34938995 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004545	antisense lncRNA gene	Chr9:38702353-38721839 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004730	antisense lncRNA gene	Chr9:34462822-34476999 (+)
PWK/PhJ	MGP_PWKPhJ_G0004441	antisense lncRNA gene	Chr9:33739999-33755421 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004381	antisense lncRNA gene	Chr9:34675095-34690946 (+)
WSB/EiJ	MGP_WSBEiJ_G0004529	antisense lncRNA gene	Chr9:34264046-34282697 (+)

Homology

• Gene Tree
  Gm26787
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  16
• Gene trapped
  16
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000096993 (Evidence)
• NCBI Gene
  102637672

Representative Sequences			Length	Strain/Species
genomic	102637672	NCBI Gene Model | MGI Sequence Detail	14790	C57BL/6J
transcript	NR_166654	RefSeq | MGI Sequence Detail	607	ZRU/MplStud

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26787:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84370	Chr9:36679177-36679188 (+)	0 bp
Tssr84371	Chr9:36679308-36679327 (+)	135 bp