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Platr31 Gene Detail
Summary
  • Symbol
    Platr31
  • Name
    pluripotency associated transcript 31
  • Synonyms
    Gm26845
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5477339
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr6:127077260-127087430 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    305 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5477339
 lncRNA gene Chr6:127077260-127087430 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004361
 antisense lncRNA gene Chr6:130588321-130590399 (+)
A/J MGP_AJ_G0004338
 antisense lncRNA gene Chr6:125630562-125632640 (+)
AKR/J MGP_AKRJ_G0004320
 antisense lncRNA gene Chr6:129029047-129031125 (+)
BALB/cJ MGP_BALBcJ_G0004324
 antisense lncRNA gene Chr6:125186835-125188913 (+)
C3H/HeJ MGP_C3HHeJ_G0004273
 antisense lncRNA gene Chr6:129148389-129150467 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004474
 antisense lncRNA gene Chr6:133985029-133999483 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003935
 antisense lncRNA gene Chr6:122803253-122805491 (+)
CAST/EiJ MGP_CASTEiJ_G0004234
 antisense lncRNA gene Chr6:129347045-129349123 (+)
CBA/J MGP_CBAJ_G0004267
 antisense lncRNA gene Chr6:139149748-139151826 (+)
DBA/2J MGP_DBA2J_G0004282
 antisense lncRNA gene Chr6:124517338-124519416 (+)
FVB/NJ MGP_FVBNJ_G0004299
 antisense lncRNA gene Chr6:123443930-123446008 (+)
LP/J MGP_LPJ_G0004361
 antisense lncRNA gene Chr6:130702287-130704365 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004290
 antisense lncRNA gene Chr6:143103260-143105338 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004471
 antisense lncRNA gene Chr6:128978377-128980455 (+)
PWK/PhJ MGP_PWKPhJ_G0004187
 antisense lncRNA gene Chr6:122788099-122790312 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004129
 antisense lncRNA gene Chr6:127060188-127062329 (+)
WSB/EiJ MGP_WSBEiJ_G0004272
 antisense lncRNA gene Chr6:129342946-129345024 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097525 Ensembl Gene Model | MGI Sequence Detail 10171 C57BL/6J ±  kb
transcript ENSMUST00000180653 Ensembl | MGI Sequence Detail 1466 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 5
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
  • Latest
    J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory