Gm26850 Gene Detail

Summary

• Symbol
  Gm26850
• Name
  predicted gene, 26850

• Feature Type
  lncRNA gene
• IDs
  MGI:5477344
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:63871054-63876080 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477344	lncRNA gene	Chr3:63871054-63876080 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003758	antisense lncRNA gene	Chr3:63010219-63015862 (+)
A/J	MGP_AJ_G0003738	antisense lncRNA gene	Chr3:61126759-61132106 (+)
AKR/J	MGP_AKRJ_G0003715	antisense lncRNA gene	Chr3:62344179-62349215 (+)
BALB/cJ	MGP_BALBcJ_G0003727	antisense lncRNA gene	Chr3:60900912-60906226 (+)
C3H/HeJ	MGP_C3HHeJ_G0003674	antisense lncRNA gene	Chr3:62581771-62587789 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003868	antisense lncRNA gene	Chr3:65314017-65319046 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003372	antisense lncRNA gene	Chr3:57628459-57634789 (+)
CAST/EiJ	MGP_CASTEiJ_G0003637	antisense lncRNA gene	Chr3:62717904-62722942 (+)
CBA/J	MGP_CBAJ_G0003670	antisense lncRNA gene	Chr3:67421725-67426751 (+)
DBA/2J	MGP_DBA2J_G0003679	antisense lncRNA gene	Chr3:60541783-60547530 (+)
FVB/NJ	MGP_FVBNJ_G0003700	antisense lncRNA gene	Chr3:59347782-59352806 (+)
LP/J	MGP_LPJ_G0003759	antisense lncRNA gene	Chr3:63858383-63863366 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003688	antisense lncRNA gene	Chr3:71895181-71900193 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003869	antisense lncRNA gene	Chr3:62277155-62282193 (+)
PWK/PhJ	MGP_PWKPhJ_G0003594	antisense lncRNA gene	Chr3:60125592-60130687 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003536	antisense lncRNA gene	Chr3:61809039-61814050 (+)
WSB/EiJ	MGP_WSBEiJ_G0003673	antisense lncRNA gene	Chr3:62413720-62418784 (+)

Homology

• Gene Tree
  Gm26850
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm26850
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000097724 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097724	Ensembl Gene Model | MGI Sequence Detail	5027	C57BL/6J
transcript	ENSMUST00000181653	Ensembl | MGI Sequence Detail	2669	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm26850:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29376	Chr3:63871052-63871064 (+)	4 bp
Tssr29377	Chr3:63872210-63872251 (+)	1,177 bp
Tssr29378	Chr3:63872252-63872262 (+)	1,203 bp