Gm26917 Gene Detail

Summary

• Symbol
  Gm26917
• Name
  predicted gene, 26917

• Feature Type
  lncRNA gene
• IDs
  MGI:5504032
  NCBI Gene: 119086081
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr17:40153888-40159679 bp, + strand

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504032	lncRNA gene	Chr17:40153888-40159679 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  381
• Gene trapped
  381
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  1

• NCBI Gene
  119086081

Representative Sequences			Length	Strain/Species
genomic	119086081	NCBI Gene Model | MGI Sequence Detail	5792	C57BL/6J
transcript	NR_170994	RefSeq | MGI Sequence Detail	5792	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 8
• Earliest
  J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm26917:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144626	Chr17:40159100-40159127 (+)	5,226 bp
Tssr144627	Chr17:40159139-40159159 (+)	5,261 bp
Tssr144628	Chr17:40159309-40159318 (+)	5,426 bp
Tssr144629	Chr17:40159340-40159392 (+)	5,478 bp
Tssr144630	Chr17:40159396-40159401 (+)	5,511 bp
Tssr144631	Chr17:40159417-40159498 (+)	5,570 bp
Tssr144632	Chr17:40159589-40159608 (+)	5,711 bp
Tssr144633	Chr17:40159642-40159655 (+)	5,761 bp