Gm26978 Gene Detail

Summary

• Symbol
  Gm26978
• Name
  predicted gene, 26978

• Feature Type
  lncRNA gene
• IDs
  MGI:5504093
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:34374802-34375775 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504093	lncRNA gene	Chr8:34374802-34375775 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037082	sense intronic lncRNA gene	Chr8:32359639-32360606 (-)
A/J	MGP_AJ_G0037070	sense intronic lncRNA gene	Chr8:31117100-31118069 (-)
AKR/J	MGP_AKRJ_G0037017	sense intronic lncRNA gene	Chr8:32089476-32090451 (-)
BALB/cJ	MGP_BALBcJ_G0037061	sense intronic lncRNA gene	Chr8:31238548-31239519 (-)
C3H/HeJ	MGP_C3HHeJ_G0036748	sense intronic lncRNA gene	Chr8:32413954-32414929 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037573	sense intronic lncRNA gene	Chr8:33592337-33593314 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034617	sense intronic lncRNA gene	Chr8:28121187-28122140 (-)
CAST/EiJ	MGP_CASTEiJ_G0035934	sense intronic lncRNA gene	Chr8:31857887-31858864 (-)
CBA/J	MGP_CBAJ_G0036723	sense intronic lncRNA gene	Chr8:34916071-34917048 (-)
DBA/2J	MGP_DBA2J_G0036898	sense intronic lncRNA gene	Chr8:31095477-31096455 (-)
FVB/NJ	MGP_FVBNJ_G0036848	sense intronic lncRNA gene	Chr8:30756789-30757758 (-)
LP/J	MGP_LPJ_G0036945	sense intronic lncRNA gene	Chr8:32329522-32330493 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036855	sense intronic lncRNA gene	Chr8:34440620-34441586 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037691	sense intronic lncRNA gene	Chr8:32173942-32174911 (-)
PWK/PhJ	MGP_PWKPhJ_G0035628	sense intronic lncRNA gene	Chr8:30611481-30612512 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035436	sense intronic lncRNA gene	Chr8:31445475-31446444 (-)
WSB/EiJ	MGP_WSBEiJ_G0036136	sense intronic lncRNA gene	Chr8:32326428-32327398 (-)

Homology

• Gene Tree
  Gm26978
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098166 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098166	Ensembl Gene Model | MGI Sequence Detail	974	C57BL/6J
transcript	ENSMUST00000182843	Ensembl | MGI Sequence Detail	304	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm26978:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80872	Chr8:34376778-34376780 (-)	-1,004 bp