Gm27000 Gene Detail

Summary

• Symbol
  Gm27000
• Name
  predicted gene, 27000

• Feature Type
  lncRNA gene
• IDs
  MGI:5504115
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:87803077-87803918 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504115	lncRNA gene	ChrX:87803077-87803918 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005409	lincRNA gene	Chr12:111770992-111771833 (+)
A/J	MGP_AJ_G0005392	lincRNA gene	Chr12:107466309-107467061 (+)
AKR/J	MGP_AKRJ_G0005372	lincRNA gene	Chr12:110601811-110602652 (+)
BALB/cJ	MGP_BALBcJ_G0005374	lincRNA gene	Chr12:107938894-107939735 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0005528	lincRNA gene	Chr12:115185500-115186376 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004913	lincRNA gene	Chr12:103992391-103993312 (+)
CAST/EiJ	MGP_CASTEiJ_G0005267	lincRNA gene	Chr12:105990508-105991434 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0007488	lincRNA gene	ChrX:83789381-83790376 (-)
LP/J	MGP_LPJ_G0005411	lincRNA gene	Chr12:111597413-111598338 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0005216	lincRNA gene	Chr12:101627253-101628179 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005137	lincRNA gene	Chr12:104250352-104251270 (+)
WSB/EiJ	MGP_WSBEiJ_G0005317	lincRNA gene	Chr12:110994814-110995737 (+)

Homology

• Gene Tree
  Gm27000
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000097961 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097961	Ensembl Gene Model | MGI Sequence Detail	842	C57BL/6J
transcript	ENSMUST00000182943	Ensembl | MGI Sequence Detail	842	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm27000:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163757	ChrX:87803924-87803925 (-)	-7 bp
Tssr163756	ChrX:87803827-87803854 (-)	77 bp