Gm27003 Gene Detail

Summary

• Symbol
  Gm27003
• Name
  predicted gene, 27003

• Feature Type
  lncRNA gene
• IDs
  MGI:5504118
  NCBI Gene: 105244282
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr2:126517490-126525725 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  243 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504118	lncRNA gene	Chr2:126517490-126525725 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003630	antisense lncRNA gene	Chr2:129902553-129911279 (+)
A/J	MGP_AJ_G0003612	antisense lncRNA gene	Chr2:124639880-124648095 (+)
AKR/J	MGP_AKRJ_G0003590	antisense lncRNA gene	Chr2:128209318-128218200 (+)
BALB/cJ	MGP_BALBcJ_G0003601	antisense lncRNA gene	Chr2:124907107-124915136 (+)
C3H/HeJ	MGP_C3HHeJ_G0003548	antisense lncRNA gene	Chr2:128701775-128709727 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003740	antisense lncRNA gene	Chr2:134032694-134040623 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003248	antisense lncRNA gene	Chr2:119364934-119372744 (+)
CAST/EiJ	MGP_CASTEiJ_G0003511	antisense lncRNA gene	Chr2:128919592-128927300 (+)
CBA/J	MGP_CBAJ_G0003545	antisense lncRNA gene	Chr2:138941098-138951772 (+)
DBA/2J	MGP_DBA2J_G0003553	antisense lncRNA gene	Chr2:124051354-124059917 (+)
FVB/NJ	MGP_FVBNJ_G0003573	antisense lncRNA gene	Chr2:122709431-122717182 (+)
LP/J	MGP_LPJ_G0003630	antisense lncRNA gene	Chr2:130162244-130170016 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003561	antisense lncRNA gene	Chr2:143016570-143026451 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003741	antisense lncRNA gene	Chr2:128231650-128239613 (+)
PWK/PhJ	MGP_PWKPhJ_G0003466	antisense lncRNA gene	Chr2:123592210-123601007 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003409	antisense lncRNA gene	Chr2:127312890-127320580 (+)
WSB/EiJ	MGP_WSBEiJ_G0003545	antisense lncRNA gene	Chr2:129116129-129123802 (+)

Homology

• Gene Tree
  Gm27003
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  30
• Chemically induced (other)
  1
• Gene trapped
  28
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm27003
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000098024 (Evidence)
• NCBI Gene
  105244282

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098024	Ensembl Gene Model | MGI Sequence Detail	8236	C57BL/6J
transcript	ENSMUST00000247624	Ensembl | MGI Sequence Detail	651	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm27003:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19961	Chr2:126515516-126515526 (+)	-1,969 bp
Tssr19962	Chr2:126515569-126515579 (+)	-1,916 bp
Tssr19963	Chr2:126516562-126516566 (+)	-926 bp
Tssr19964	Chr2:126517217-126517267 (+)	-248 bp
Tssr19965	Chr2:126517818-126517830 (+)	334 bp