Gm27004 Gene Detail

Summary

• Symbol
  Gm27004
• Name
  predicted gene, 27004

• Feature Type
  lncRNA gene
• IDs
  MGI:5504119
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:112730511-112731237 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504119	lncRNA gene	Chr5:112730511-112731237 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006761	lincRNA gene	Chr5:115172942-115173675 (+)
A/J	MGP_AJ_G0006755	lincRNA gene	Chr5:110689746-110690479 (+)
AKR/J	MGP_AKRJ_G0006725	lincRNA gene	Chr5:114201935-114202661 (+)
BALB/cJ	MGP_BALBcJ_G0006731	lincRNA gene	Chr5:112052392-112053125 (+)
C3H/HeJ	MGP_C3HHeJ_G0006676	lincRNA gene	Chr5:114642230-114642963 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006896	lincRNA gene	Chr5:119662866-119663592 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006152	lincRNA gene	Chr5:105515873-105516606 (+)
CAST/EiJ	MGP_CASTEiJ_G0006599	lincRNA gene	Chr5:113551102-113551835 (+)
CBA/J	MGP_CBAJ_G0006658	lincRNA gene	Chr5:124155906-124156639 (+)
DBA/2J	MGP_DBA2J_G0006678	lincRNA gene	Chr5:110755164-110755890 (+)
FVB/NJ	MGP_FVBNJ_G0006702	lincRNA gene	Chr5:109485537-109486270 (+)
LP/J	MGP_LPJ_G0006762	lincRNA gene	Chr5:115737431-115738164 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006686	lincRNA gene	Chr5:128745644-128746377 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006898	lincRNA gene	Chr5:113635129-113635855 (+)
PWK/PhJ	MGP_PWKPhJ_G0006538	lincRNA gene	Chr5:109370481-109371213 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006444	lincRNA gene	Chr5:111122926-111123653 (+)
WSB/EiJ	MGP_WSBEiJ_G0006650	lincRNA gene	Chr5:114158217-114158950 (+)

Homology

• Gene Tree
  Gm27004
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm27004
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098027 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098027	Ensembl Gene Model | MGI Sequence Detail	727	C57BL/6J
transcript	ENSMUST00000183300	Ensembl | MGI Sequence Detail	727	Not Applicable

References

• Summaries
  All 6

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17