Gm27008 Gene Detail

Summary

• Symbol
  Gm27008
• Name
  predicted gene, 27008

• Feature Type
  lncRNA gene
• IDs
  MGI:5504123
  NCBI Gene: 102639188
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:106810557-106888916 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1770 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504123	lncRNA gene	Chr3:106810557-107001210 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003812	antisense lncRNA gene	Chr3:108391411-108563997 (-)
A/J	MGP_AJ_G0003792	antisense lncRNA gene	Chr3:104963739-105124121 (-)
AKR/J	MGP_AKRJ_G0003768	antisense lncRNA gene	Chr3:107522848-107694508 (-)
BALB/cJ	MGP_BALBcJ_G0003779	antisense lncRNA gene	Chr3:104659273-104821113 (-)
C3H/HeJ	MGP_C3HHeJ_G0003726	antisense lncRNA gene	Chr3:107859924-108037283 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003921	antisense lncRNA gene	Chr3:112460140-112643359 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003424	antisense lncRNA gene	Chr3:101116727-101279351 (-)
CAST/EiJ	MGP_CASTEiJ_G0003690	antisense lncRNA gene	Chr3:107218271-107396999 (-)
CBA/J	MGP_CBAJ_G0003720	antisense lncRNA gene	Chr3:116248340-116430577 (-)
DBA/2J	MGP_DBA2J_G0003732	antisense lncRNA gene	Chr3:104166712-104327443 (-)
FVB/NJ	MGP_FVBNJ_G0003753	antisense lncRNA gene	Chr3:102047698-102207385 (-)
LP/J	MGP_LPJ_G0003814	antisense lncRNA gene	Chr3:109798902-109983311 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003740	antisense lncRNA gene	Chr3:122356363-122564239 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003922	antisense lncRNA gene	Chr3:107106237-107276278 (-)
PWK/PhJ	MGP_PWKPhJ_G0003646	antisense lncRNA gene	Chr3:103885281-104047702 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003590	antisense lncRNA gene	Chr3:105240555-105418752 (-)
WSB/EiJ	MGP_WSBEiJ_G0003726	antisense lncRNA gene	Chr3:107637724-107811615 (-)

Homology

• Gene Tree
  Gm27008
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm27008
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  6

• Ensembl
  ENSMUSG00000098108 (Evidence)
• NCBI Gene
  102639188

Representative Sequences			Length	Strain/Species
genomic	102639188	NCBI Gene Model | MGI Sequence Detail	78360	C57BL/6J
transcript	AK038087	GenBank | ENA | DDBJ | MGI Sequence Detail	1362	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426