Gm27017 Gene Detail

Summary

• Symbol
  Gm27017
• Name
  predicted gene, 27017

• Feature Type
  lncRNA gene
• IDs
  MGI:5504132
  NCBI Gene: 102631857
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:61885796-61947220 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1399 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504132	lncRNA gene	Chr14:61885796-61947220 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005557	lincRNA gene	Chr14:56046854-56065204 (+)
A/J	MGP_AJ_G0005542	lincRNA gene	Chr14:54817764-54836117 (+)
AKR/J	MGP_AKRJ_G0005521	lincRNA gene	Chr14:56775945-56794336 (+)
BALB/cJ	MGP_BALBcJ_G0005524	lincRNA gene	Chr14:54772268-54790630 (+)
C3H/HeJ	MGP_C3HHeJ_G0005470	lincRNA gene	Chr14:56405342-56423680 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005681	lincRNA gene	Chr14:58769758-58788123 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005048	lincRNA gene	Chr14:52787808-52805897 (+)
CAST/EiJ	MGP_CASTEiJ_G0005413	lincRNA gene	Chr14:52799989-52818726 (+)
CBA/J	MGP_CBAJ_G0005460	lincRNA gene	Chr14:60466866-60485227 (+)
DBA/2J	MGP_DBA2J_G0005475	lincRNA gene	Chr14:54483968-54502651 (+)
FVB/NJ	MGP_FVBNJ_G0005501	lincRNA gene	Chr14:53900518-53918874 (+)
LP/J	MGP_LPJ_G0005560	lincRNA gene	Chr14:57074936-57095855 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005487	lincRNA gene	Chr14:59780297-59798625 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005679	lincRNA gene	Chr14:55920034-55938387 (+)
PWK/PhJ	MGP_PWKPhJ_G0005363	lincRNA gene	Chr14:51148634-51167182 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005281	lincRNA gene	Chr14:51842950-51865405 (+)
WSB/EiJ	MGP_WSBEiJ_G0005463	lincRNA gene	Chr14:56237303-56255672 (+)

Homology

• Gene Tree
  Gm27017
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  5
• Targeted
  3
• Genomic Mutations
  4 involving Gm27017
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42

• Ensembl
  ENSMUSG00000097997 (Evidence)
• NCBI Gene
  102631857

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097997	Ensembl Gene Model | MGI Sequence Detail	61425	C57BL/6J
transcript	ENSMUST00000320187	Ensembl | MGI Sequence Detail	2353	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Diseases 2

  Phenotypes 8
• Earliest
  J:156946 Klein U, et al., The DLEU2/miR-15a/16-1 Cluster Controls B Cell Proliferation and Its Deletion Leads to Chronic Lymphocytic Leukemia. Cancer Cell. 2010 Jan 19;17(1):28-40
• Latest
  J:317184 Chesi M, et al., Monosomic loss of MIR15A/MIR16-1 is a driver of multiple myeloma proliferation and disease progression. Blood Cancer Discov. 2020 Jul;1(1):68-81

TSS for Gm27017:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125992	Chr14:61885809-61885814 (+)	16 bp
Tssr125993	Chr14:61885863-61885879 (+)	75 bp
Tssr125994	Chr14:61885884-61885894 (+)	93 bp
Tssr125995	Chr14:61885905-61885914 (+)	114 bp