Gm27027 Gene Detail

Summary

• Symbol
  Gm27027
• Name
  predicted gene, 27027

• Feature Type
  protein coding gene
• IDs
  MGI:5504142
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:93787162-93826699 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  979 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504142	protein coding gene	Chr2:93787162-93826699 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0026182	protein coding gene	Chr2:95478188-95518470 (-)
A/J	MGP_AJ_G0026143	protein coding gene	Chr2:91597667-91633183 (-)
AKR/J	MGP_AKRJ_G0026124	protein coding gene	Chr2:94173887-94210628 (-)
BALB/cJ	MGP_BALBcJ_G0026152	protein coding gene	Chr2:91791516-91829499 (-)
C3H/HeJ	MGP_C3HHeJ_G0025903	protein coding gene	Chr2:94445453-94481455 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0026603	protein coding gene	Chr2:98730228-98768550 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023994	protein coding gene	Chr2:88078407-88114062 (-)
CAST/EiJ	MGP_CASTEiJ_G0025368	protein coding gene	Chr2:95048847-95084473 (-)
CBA/J	MGP_CBAJ_G0025881	protein coding gene	Chr2:102175007-102215781 (-)
DBA/2J	MGP_DBA2J_G0026017	protein coding gene	Chr2:91203203-91241182 (-)
FVB/NJ	MGP_FVBNJ_G0025980	protein coding gene	Chr2:90326144-90361012 (-)
LP/J	MGP_LPJ_G0026121	protein coding gene	Chr2:95672960-95708968 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0026006	protein coding gene	Chr2:105070402-105106668 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0026657	protein coding gene	Chr2:94248059-94285580 (-)
PWK/PhJ	MGP_PWKPhJ_G0025103	protein coding gene	Chr2:90957793-90991567 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0024904	protein coding gene	Chr2:93811905-93850025 (-)
WSB/EiJ	MGP_WSBEiJ_G0025435	protein coding gene	Chr2:94870278-94906190 (-)

Homology

• Gene Tree
  Gm27027
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm27027
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000098004 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098004	Ensembl Gene Model | MGI Sequence Detail	39538	C57BL/6J
transcript	ENSMUST00000183110	Ensembl | MGI Sequence Detail	547	Not Applicable
polypeptide	ENSMUSP00000138281	Ensembl | MGI Sequence Detail	97	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR032854 Alkylated DNA repair protein alkB homologue 3
  IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like
  IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily
  IPR005123 Oxoglutarate/iron-dependent dioxygenase

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm27027:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25309	Chr2:93815202-93815210 (-)	11,493 bp
Tssr25308	Chr2:93815156-93815190 (-)	11,526 bp
Tssr25307	Chr2:93815133-93815140 (-)	11,562 bp