Gm27029 Gene Detail

Summary

• Symbol
  Gm27029
• Name
  predicted gene, 27029

• Feature Type
  protein coding gene
• IDs
  MGI:5504144
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:101297490-101315622 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  605 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504144	protein coding gene	Chr11:101297490-101315622 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0019198	protein coding gene	Chr11:104264638-104282563 (-)
A/J	MGP_AJ_G0019166	protein coding gene	Chr11:99883265-99901111 (-)
AKR/J	MGP_AKRJ_G0019135	protein coding gene	Chr11:102991157-103008906 (-)
BALB/cJ	MGP_BALBcJ_G0019140	protein coding gene	Chr11:100377670-100396923 (-)
C3H/HeJ	MGP_C3HHeJ_G0018949	protein coding gene	Chr11:103159850-103178384 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0019589	protein coding gene	Chr11:107540541-107560305 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017215	protein coding gene	Chr11:97285760-97305211 (-)
CAST/EiJ	MGP_CASTEiJ_G0018503	protein coding gene	Chr11:104145540-104165689 (-)
CBA/J	MGP_CBAJ_G0018918	protein coding gene	Chr11:111973292-111993865 (-)
DBA/2J	MGP_DBA2J_G0019030	protein coding gene	Chr11:99405041-99424625 (-)
FVB/NJ	MGP_FVBNJ_G0019020	protein coding gene	Chr11:98952787-98970708 (-)
LP/J	MGP_LPJ_G0019099	protein coding gene	Chr11:104811821-104829708 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019051	protein coding gene	Chr11:111530955-111550344 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019627	protein coding gene	Chr11:103314020-103337828 (-)
PWK/PhJ	MGP_PWKPhJ_G0018266	protein coding gene	Chr11:100467039-100491175 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0018058	protein coding gene	Chr11:103040844-103063476 (-)
WSB/EiJ	MGP_WSBEiJ_G0018552	protein coding gene	Chr11:103316089-103335677 (-)

Homology

• Gene Tree
  Gm27029
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm27029
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  2

• Ensembl
  ENSMUSG00000097239 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097239	Ensembl Gene Model | MGI Sequence Detail	18133	C57BL/6J
transcript	ENSMUST00000107259	Ensembl | MGI Sequence Detail	1855	Not Applicable
polypeptide	ENSMUSP00000102880	Ensembl | MGI Sequence Detail	543	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR051335 Alanyl-tRNA Editing Enzymes
  IPR018165 Alanyl-tRNA synthetase, class IIc, core domain
  IPR007052 CS domain
  IPR008978 HSP20-like chaperone
  IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily
  IPR012947 Threonyl/alanyl tRNA synthetase, SAD
  IPR009000 Translation protein, beta-barrel domain superfamily

References

• Summaries
  All 9

  Phenotypes 7
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm27029:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110926	Chr11:101315456-101315501 (-)	143 bp