Gm27045 Gene Detail

Summary

• Symbol
  Gm27045
• Name
  predicted gene, 27045

• Feature Type
  lncRNA gene
• IDs
  MGI:5504160
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:122268819-122270220 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504160	lncRNA gene	Chr8:122268819-122270220 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004593	antisense lncRNA gene	Chr8:125058866-125060225 (+)
A/J	MGP_AJ_G0004573	antisense lncRNA gene	Chr8:119847643-119849002 (+)
AKR/J	MGP_AKRJ_G0004557	antisense lncRNA gene	Chr8:123366124-123367483 (+)
BALB/cJ	MGP_BALBcJ_G0004558	antisense lncRNA gene	Chr8:120068490-120069849 (+)
C3H/HeJ	MGP_C3HHeJ_G0004507	antisense lncRNA gene	Chr8:124070558-124071917 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004707	antisense lncRNA gene	Chr8:129200988-129202347 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004158	antisense lncRNA gene	Chr8:112700473-112701815 (+)
CAST/EiJ	MGP_CASTEiJ_G0004465	antisense lncRNA gene	Chr8:124108228-124109572 (+)
CBA/J	MGP_CBAJ_G0004501	antisense lncRNA gene	Chr8:133965424-133966783 (+)
DBA/2J	MGP_DBA2J_G0004516	antisense lncRNA gene	Chr8:119052333-119053692 (+)
FVB/NJ	MGP_FVBNJ_G0004533	antisense lncRNA gene	Chr8:118161549-118162908 (+)
LP/J	MGP_LPJ_G0004597	antisense lncRNA gene	Chr8:125179739-125181098 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004522	antisense lncRNA gene	Chr8:136213632-136214991 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004707	antisense lncRNA gene	Chr8:123537569-123538928 (+)
PWK/PhJ	MGP_PWKPhJ_G0004418	antisense lncRNA gene	Chr8:118860844-118862186 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004359	antisense lncRNA gene	Chr8:122258416-122259771 (+)
WSB/EiJ	MGP_WSBEiJ_G0004506	antisense lncRNA gene	Chr8:124288700-124290059 (+)

Homology

• Gene Tree
  Gm27045
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098211 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098211	Ensembl Gene Model | MGI Sequence Detail	1402	C57BL/6J
transcript	ENSMUST00000182145	Ensembl | MGI Sequence Detail	1402	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm27045:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79807	Chr8:122268804-122268811 (+)	-11 bp
Tssr79808	Chr8:122268819-122268826 (+)	4 bp
Tssr79809	Chr8:122268838-122268845 (+)	23 bp
Tssr79810	Chr8:122268848-122268874 (+)	42 bp