Gm27046 Pseudogene Detail

Summary

• Symbol
  Gm27046
• Name
  predicted gene, 27046

• Feature Type
  pseudogene
• IDs
  MGI:5504161
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:83515540-83516002 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5504161	pseudogene	Chr4:83515540-83516002 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012738	pseudogene	Chr4:83202526-83202988 (+)
A/J	MGP_AJ_G0012724	pseudogene	Chr4:80298050-80298512 (+)
AKR/J	MGP_AKRJ_G0012696	pseudogene	Chr4:82398296-82398758 (+)
BALB/cJ	MGP_BALBcJ_G0012706	pseudogene	Chr4:80536477-80536939 (+)
C3H/HeJ	MGP_C3HHeJ_G0012565	pseudogene	Chr4:82997737-82998199 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013036	pseudogene	Chr4:86489010-86489472 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011327	pseudogene	Chr4:76258637-76259092 (+)
CAST/EiJ	MGP_CASTEiJ_G0012321	pseudogene	Chr4:80911371-80911832 (+)
CBA/J	MGP_CBAJ_G0012543	pseudogene	Chr4:89171586-89172048 (+)
DBA/2J	MGP_DBA2J_G0012603	pseudogene	Chr4:80093522-80093984 (+)
FVB/NJ	MGP_FVBNJ_G0012607	pseudogene	Chr4:79090806-79091268 (+)
LP/J	MGP_LPJ_G0012675	pseudogene	Chr4:83571350-83571812 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012616	pseudogene	Chr4:94235377-94235839 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013042	pseudogene	Chr4:82453524-82453986 (+)
PWK/PhJ	MGP_PWKPhJ_G0012143	pseudogene	Chr4:78446666-78447127 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011955	pseudogene	Chr4:79994024-79994453 (+)
WSB/EiJ	MGP_WSBEiJ_G0012345	pseudogene	Chr4:82623218-82623680 (+)

Homology

• Gene Tree
  Gm27046
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm27046
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098217 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098217	Ensembl Gene Model | MGI Sequence Detail	463	C57BL/6J
transcript	ENSMUST00000182160	Ensembl | MGI Sequence Detail	463	Not Applicable

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm27046:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37695	Chr4:83515515-83515524 (+)	-20 bp