Gm27175 Gene Detail

Summary

• Symbol
  Gm27175
• Name
  predicted gene 27175

• Feature Type
  lncRNA gene
• IDs
  MGI:5521018
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:69740305-69761054 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521018	lncRNA gene	Chr14:69740305-69761054 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003264	antisense lncRNA gene	Chr14:64058363-64080097 (+)
A/J	MGP_AJ_G0003240	antisense lncRNA gene	Chr14:62541587-62562742 (+)
AKR/J	MGP_AKRJ_G0003223	antisense lncRNA gene	Chr14:64635676-64656425 (+)
BALB/cJ	MGP_BALBcJ_G0003229	antisense lncRNA gene	Chr14:62517243-62537989 (+)
C3H/HeJ	MGP_C3HHeJ_G0003182	antisense lncRNA gene	Chr14:64363180-64383895 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003371	antisense lncRNA gene	Chr14:66978478-66999894 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002895	antisense lncRNA gene	Chr14:60379535-60400489 (+)
CAST/EiJ	MGP_CASTEiJ_G0003148	antisense lncRNA gene	Chr14:60901529-60922091 (+)
CBA/J	MGP_CBAJ_G0003179	antisense lncRNA gene	Chr14:69063796-69087571 (+)
DBA/2J	MGP_DBA2J_G0003184	antisense lncRNA gene	Chr14:62141106-62162186 (+)
FVB/NJ	MGP_FVBNJ_G0003203	antisense lncRNA gene	Chr14:61558483-61579269 (+)
LP/J	MGP_LPJ_G0003600	antisense lncRNA gene	Chr2:86399851-86420315 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003192	antisense lncRNA gene	Chr14:68019505-68040645 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003373	antisense lncRNA gene	Chr14:63899702-63920437 (+)
PWK/PhJ	MGP_PWKPhJ_G0003106	antisense lncRNA gene	Chr14:58890484-58911176 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003052	antisense lncRNA gene	Chr14:59823935-59844449 (+)
WSB/EiJ	MGP_WSBEiJ_G0003182	antisense lncRNA gene	Chr14:64196859-64217779 (+)

Homology

• Gene Tree
  Gm27175
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm27175
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099315 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099315	Ensembl Gene Model | MGI Sequence Detail	20750	C57BL/6J
transcript	ENSMUST00000183759	Ensembl | MGI Sequence Detail	606	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm27175:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164711	Chr14:69740913-69740919 (+)	611 bp