Gm27230 Gene Detail

Summary

• Symbol
  Gm27230
• Name
  predicted gene 27230

• Feature Type
  lncRNA gene
• IDs
  MGI:5521073
  NCBI Gene: 102635569
• Alliance
  gene page
• Transcription Start Sites
  12 TSS

Location &
Maps

• Sequence Map
  Chr9:72297669-72318177 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  730 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5521073	lncRNA gene	Chr9:72286147-72331194 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015743	unclassified non-coding RNA gene	Chr9:72553281-72566055 (+)
A/J	MGP_AJ_G0015720	unclassified non-coding RNA gene	Chr9:70029828-70038386 (+)
AKR/J	MGP_AKRJ_G0015684	unclassified non-coding RNA gene	Chr9:71695353-71703880 (+)
BALB/cJ	MGP_BALBcJ_G0015681	unclassified non-coding RNA gene	Chr9:69737345-69745901 (+)
C3H/HeJ	MGP_C3HHeJ_G0015503	unclassified non-coding RNA gene	Chr9:72199185-72207769 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016137	unclassified non-coding RNA gene	Chr9:74454316-74462825 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013863	unclassified non-coding RNA gene	Chr9:69517861-69526509 (+)
CAST/EiJ	MGP_CASTEiJ_G0015058	unclassified non-coding RNA gene	Chr9:72506794-72515307 (+)
CBA/J	MGP_CBAJ_G0015483	unclassified non-coding RNA gene	Chr9:77056454-77065060 (+)
DBA/2J	MGP_DBA2J_G0015581	unclassified non-coding RNA gene	Chr9:69746765-69755331 (+)
FVB/NJ	MGP_FVBNJ_G0015586	unclassified non-coding RNA gene	Chr9:69060407-69068973 (+)
LP/J	MGP_LPJ_G0015661	unclassified non-coding RNA gene	Chr9:72757309-72765867 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015609	unclassified non-coding RNA gene	Chr9:78129270-78137829 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016179	unclassified non-coding RNA gene	Chr9:71838860-71847416 (+)
PWK/PhJ	MGP_PWKPhJ_G0014839	unclassified non-coding RNA gene	Chr9:70002858-70011901 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014627	unclassified non-coding RNA gene	Chr9:72140347-72152986 (+)
WSB/EiJ	MGP_WSBEiJ_G0015162	unclassified non-coding RNA gene	Chr9:71773637-71783168 (+)

Homology

• Gene Tree
  Gm27230
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm27230
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  4

• Ensembl
  ENSMUSG00000098959 (Evidence)
• NCBI Gene
  102635569

Representative Sequences			Length	Strain/Species
genomic	102635569	NCBI Gene Model | MGI Sequence Detail	20509	C57BL/6J
transcript	AK040357	GenBank | ENA | DDBJ | MGI Sequence Detail	926	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm27230:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85981	Chr9:72297224-72297227 (+)	-443 bp
Tssr85986	Chr9:72303241-72303257 (+)	5,580 bp
Tssr85987	Chr9:72303541-72303561 (+)	5,882 bp
Tssr85988	Chr9:72303582-72303600 (+)	5,922 bp
Tssr85989	Chr9:72303609-72303627 (+)	5,949 bp
Tssr85990	Chr9:72303634-72303645 (+)	5,971 bp
Tssr85991	Chr9:72307625-72307634 (+)	9,961 bp
Tssr85992	Chr9:72307674-72307696 (+)	10,016 bp
Tssr85993	Chr9:72307706-72307716 (+)	10,042 bp
Tssr85994	Chr9:72309024-72309027 (+)	11,357 bp
Tssr85995	Chr9:72315847-72315856 (+)	18,183 bp
Tssr85996	Chr9:72315868-72315875 (+)	18,203 bp