Gm27343 Gene Detail

Summary

• Symbol
  Gm27343
• Name
  predicted gene, 27343

• Feature Type
  snRNA gene
• IDs
  MGI:5530725
  NCBI Gene: 115489597
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:152259182-152259244 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530725	snRNA gene	Chr2:152259182-152259244 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037774	snRNA gene	Chr2:156963448-156963510 (+)
A/J	MGP_AJ_G0037761	snRNA gene	Chr2:150703209-150703271 (+)
AKR/J	MGP_AKRJ_G0037700	snRNA gene	Chr2:155102939-155103001 (+)
BALB/cJ	MGP_BALBcJ_G0037743	snRNA gene	Chr2:151013132-151013194 (+)
C3H/HeJ	MGP_C3HHeJ_G0037418	snRNA gene	Chr2:155485383-155485445 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038272	snRNA gene	Chr2:161543325-161543387 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035177	snRNA gene	Chr2:144292403-144292465 (+)
CAST/EiJ	MGP_CASTEiJ_G0036581	snRNA gene	Chr2:155718832-155718894 (+)
CBA/J	MGP_CBAJ_G0037393	snRNA gene	Chr2:167453329-167453391 (+)
DBA/2J	MGP_DBA2J_G0037574	snRNA gene	Chr2:149919488-149919550 (+)
FVB/NJ	MGP_FVBNJ_G0037521	snRNA gene	Chr2:148362818-148362880 (+)
LP/J	MGP_LPJ_G0037626	snRNA gene	Chr2:157117611-157117673 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037534	snRNA gene	Chr2:171562061-171562123 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038382	snRNA gene	Chr2:154987338-154987400 (+)
PWK/PhJ	MGP_PWKPhJ_G0036277	snRNA gene	Chr2:149436179-149436241 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036057	snRNA gene	Chr2:153810429-153810491 (+)
WSB/EiJ	MGP_WSBEiJ_G0036796	snRNA gene	Chr2:155908512-155908574 (+)

Homology

• Gene Tree
  Gm27343
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000088139 (Evidence)
• NCBI Gene
  115489597

Representative Sequences			Length	Strain/Species
genomic	115489597	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J
transcript	XR_004941167	RefSeq | MGI Sequence Detail	63	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;