Mir6988 Gene Detail

Summary

• Symbol
  Mir6988
• Name
  microRNA 6988
• Synonyms
  mmu-mir-6988

• Feature Type
  miRNA gene
• IDs
  MGI:5530975
  NCBI Gene: 102465597
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:6101364-6101422 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530975	miRNA gene	Chr19:6101364-6101422 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008415	miRNA gene	Chr19:3078920-3078978 (+)
A/J	MGP_AJ_G0008404	miRNA gene	Chr19:2908042-2908100 (+)
AKR/J	MGP_AKRJ_G0008389	miRNA gene	Chr19:2998493-2998551 (+)
BALB/cJ	MGP_BALBcJ_G0008390	miRNA gene	Chr19:2903286-2903344 (+)
C3H/HeJ	MGP_C3HHeJ_G0007873	miRNA gene	Chr12:110244800-110244858 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0008591	miRNA gene	Chr19:3137868-3137926 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007618	miRNA gene	Chr19:2837637-2837695 (+)
CAST/EiJ	MGP_CASTEiJ_G0008194	miRNA gene	Chr19:3024674-3024732 (+)
CBA/J	MGP_CBAJ_G0007843	miRNA gene	Chr12:118891436-118891494 (-)
DBA/2J	MGP_DBA2J_G0008333	miRNA gene	Chr19:2895170-2895228 (+)
FVB/NJ	MGP_FVBNJ_G0008355	miRNA gene	Chr19:2906988-2907046 (+)
LP/J	MGP_LPJ_G0008418	miRNA gene	Chr19:3058771-3058829 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007868	miRNA gene	Chr12:122040423-122040481 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008580	miRNA gene	Chr19:3027286-3027344 (+)
PWK/PhJ	MGP_PWKPhJ_G0008118	miRNA gene	Chr19:2927174-2927232 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007994	miRNA gene	Chr19:2986434-2986492 (+)
WSB/EiJ	MGP_WSBEiJ_G0008277	miRNA gene	Chr19:3033085-3033143 (+)

Homology

• Gene Tree
  Mir6988
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098928 (Evidence)
• NCBI Gene
  102465597

Representative Sequences			Length	Strain/Species
genomic	102465597	NCBI Gene Model | MGI Sequence Detail	59	C57BL/6J
transcript	NR_105954	RefSeq | MGI Sequence Detail	59	ZRU/MplStud

Other Database
Links

miRBase

MI0022836

References

• Summaries
  All 4
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir6988:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154543	Chr19:6100660-6100683 (+)	-692 bp