Gm27616 Gene Detail

Summary

• Symbol
  Gm27616
• Name
  predicted gene, 27616

• Feature Type
  miRNA gene
• IDs
  MGI:5530998
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:162501727-162501789 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530998	miRNA gene	Chr1:162501727-162501789 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007675	miRNA gene	Chr1:168015847-168015909 (-)
A/J	MGP_AJ_G0007669	miRNA gene	Chr1:161186088-161186150 (-)
AKR/J	MGP_AKRJ_G0007643	miRNA gene	Chr1:166070011-166070073 (-)
BALB/cJ	MGP_BALBcJ_G0007647	miRNA gene	Chr1:161710856-161710918 (-)
C3H/HeJ	MGP_C3HHeJ_G0007591	miRNA gene	Chr1:166273447-166273509 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007821	miRNA gene	Chr1:173677063-173677125 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006985	miRNA gene	Chr1:153233104-153233165 (-)
CAST/EiJ	MGP_CASTEiJ_G0007489	miRNA gene	Chr1:165924962-165925024 (-)
CBA/J	MGP_CBAJ_G0007566	miRNA gene	Chr1:179868463-179868525 (-)
DBA/2J	MGP_DBA2J_G0007600	miRNA gene	Chr1:160125885-160125947 (-)
FVB/NJ	MGP_FVBNJ_G0007616	miRNA gene	Chr1:158550015-158550077 (-)
LP/J	MGP_LPJ_G0007680	miRNA gene	Chr1:169146512-169146574 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007590	miRNA gene	Chr1:187373909-187373971 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007822	miRNA gene	Chr1:165899434-165899496 (-)
PWK/PhJ	MGP_PWKPhJ_G0007422	miRNA gene	Chr1:159306142-159306204 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007324	miRNA gene	Chr1:164790417-164790479 (-)
WSB/EiJ	MGP_WSBEiJ_G0007557	miRNA gene	Chr1:166081169-166081231 (-)

Homology

• Gene Tree
  Gm27616
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098259 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098259	Ensembl Gene Model | MGI Sequence Detail	63	C57BL/6J
transcript	ENSMUST00000184547	Ensembl | MGI Sequence Detail	63	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm27616:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14633	Chr1:162503446-162503450 (-)	-1,659 bp
Tssr14632	Chr1:162503056-162503111 (-)	-1,295 bp
Tssr14631	Chr1:162502778-162502782 (-)	-991 bp