Mir6338 Gene Detail

Summary

• Symbol
  Mir6338
• Name
  microRNA 6338
• Synonyms
  mmu-mir-6338

• Feature Type
  miRNA gene
• IDs
  MGI:5531060
  NCBI Gene: 102465172
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:72279582-72279690 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531060	miRNA gene	Chr11:72279582-72279690 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007835	miRNA gene	Chr11:73004427-73004535 (+)
A/J	MGP_AJ_G0007831	miRNA gene	Chr11:70280208-70280316 (+)
AKR/J	MGP_AKRJ_G0007805	miRNA gene	Chr11:72425513-72425621 (+)
BALB/cJ	MGP_BALBcJ_G0007808	miRNA gene	Chr11:70574120-70574228 (+)
C3H/HeJ	MGP_C3HHeJ_G0007755	miRNA gene	Chr11:72381373-72381481 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007986	miRNA gene	Chr11:75221651-75221759 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007131	miRNA gene	Chr11:67115151-67115259 (+)
CAST/EiJ	MGP_CASTEiJ_G0007648	miRNA gene	Chr11:72751129-72751237 (+)
CBA/J	MGP_CBAJ_G0007726	miRNA gene	Chr11:78551233-78551341 (+)
DBA/2J	MGP_DBA2J_G0007762	miRNA gene	Chr11:69916203-69916311 (+)
FVB/NJ	MGP_FVBNJ_G0007779	miRNA gene	Chr11:69458487-69458595 (+)
LP/J	MGP_LPJ_G0007839	miRNA gene	Chr11:73513803-73513911 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007749	miRNA gene	Chr11:79109410-79109518 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007984	miRNA gene	Chr11:72619112-72619220 (+)
PWK/PhJ	MGP_PWKPhJ_G0007577	miRNA gene	Chr11:70532249-70532357 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007473	miRNA gene	Chr11:72323618-72323726 (+)
WSB/EiJ	MGP_WSBEiJ_G0007716	miRNA gene	Chr11:72360099-72360207 (+)

Homology

• Gene Tree
  Mir6338
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Mir6338
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098658 (Evidence)
• NCBI Gene
  102465172

Representative Sequences			Length	Strain/Species
genomic	102465172	NCBI Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	NR_105756	RefSeq | MGI Sequence Detail	109	ZRU/MplStud

Other Database
Links

miRBase

MI0021866

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52