Mir6953 Gene Detail

Summary

• Symbol
  Mir6953
• Name
  microRNA 6953
• Synonyms
  mmu-mir-6953

• Feature Type
  miRNA gene
• IDs
  MGI:5531120
  NCBI Gene: 102465575
• Alliance
  gene page
• Transcription Start Sites
  12 TSS

Location &
Maps

• Sequence Map
  Chr15:76132391-76132458 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  45 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531120	miRNA gene	Chr15:76132391-76132458 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008186	miRNA gene	Chr15:76311776-76311843 (+)
A/J	MGP_AJ_G0008176	miRNA gene	Chr15:73534756-73534823 (+)
AKR/J	MGP_AKRJ_G0008156	miRNA gene	Chr15:75527977-75528044 (+)
BALB/cJ	MGP_BALBcJ_G0008160	miRNA gene	Chr15:73562133-73562200 (+)
C3H/HeJ	MGP_C3HHeJ_G0008101	miRNA gene	Chr15:75575534-75575601 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008351	miRNA gene	Chr15:79164654-79164721 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007430	miRNA gene	Chr15:70197097-70197163 (+)
CAST/EiJ	MGP_CASTEiJ_G0007977	miRNA gene	Chr15:76376397-76376470 (+)
CBA/J	MGP_CBAJ_G0008070	miRNA gene	Chr15:81664084-81664151 (+)
DBA/2J	MGP_DBA2J_G0008104	miRNA gene	Chr15:73072454-73072521 (+)
FVB/NJ	MGP_FVBNJ_G0008129	miRNA gene	Chr15:72119140-72119207 (+)
LP/J	MGP_LPJ_G0008184	miRNA gene	Chr15:76404923-76404990 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008096	miRNA gene	Chr15:86987650-86987717 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008346	miRNA gene	Chr15:75771327-75771394 (+)
PWK/PhJ	MGP_PWKPhJ_G0007899	miRNA gene	Chr15:73218046-73218113 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007790	miRNA gene	Chr15:75493251-75493318 (+)
WSB/EiJ	MGP_WSBEiJ_G0008055	miRNA gene	Chr15:75863772-75863845 (+)

Homology

• Gene Tree
  Mir6953
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  3
• Radiation induced
  2
• Genomic Mutations
  5 involving Mir6953
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098625 (Evidence)
• NCBI Gene
  102465575

Representative Sequences			Length	Strain/Species
genomic	102465575	NCBI Gene Model | MGI Sequence Detail	68	C57BL/6J
transcript	NR_105918	RefSeq | MGI Sequence Detail	68	ZRU/MplStud

Other Database
Links

miRBase

MI0022800

References

• Summaries
  All 27

  Diseases 1

  Phenotypes 23
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Mir6953:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131725	Chr15:76131726-76131741 (+)	-657 bp
Tssr131726	Chr15:76131798-76131809 (+)	-587 bp
Tssr131727	Chr15:76131864-76131876 (+)	-521 bp
Tssr131728	Chr15:76131884-76131895 (+)	-501 bp
Tssr131729	Chr15:76132023-76132036 (+)	-361 bp
Tssr131730	Chr15:76132044-76132056 (+)	-341 bp
Tssr131731	Chr15:76132107-76132123 (+)	-276 bp
Tssr131732	Chr15:76132132-76132153 (+)	-248 bp
Tssr131733	Chr15:76132177-76132189 (+)	-208 bp
Tssr131734	Chr15:76132194-76132218 (+)	-185 bp
Tssr131735	Chr15:76132261-76132272 (+)	-124 bp
Tssr131736	Chr15:76132305-76132342 (+)	-67 bp