Mir8112 Gene Detail

Summary

• Symbol
  Mir8112
• Name
  microRNA 8112
• Synonyms
  mmu-mir-8112

• Feature Type
  miRNA gene
• IDs
  MGI:5531121
  NCBI Gene: 102465900
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:71248655-71248785 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531121	miRNA gene	Chr6:71248655-71248785 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008909	miRNA gene	Chr6:71738282-71738412 (+)
A/J	MGP_AJ_G0008895	miRNA gene	Chr6:68982106-68982236 (+)
AKR/J	MGP_AKRJ_G0008883	miRNA gene	Chr6:70962406-70962536 (+)
BALB/cJ	MGP_BALBcJ_G0008883	miRNA gene	Chr6:69016020-69016150 (+)
C3H/HeJ	MGP_C3HHeJ_G0008849	miRNA gene	Chr6:113287382-113287512 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0009112	miRNA gene	Chr6:73634200-73634330 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008029	miRNA gene	Chr6:68168530-68168660 (+)
CAST/EiJ	MGP_CASTEiJ_G0008663	miRNA gene	Chr6:70824212-70824342 (+)
CBA/J	MGP_CBAJ_G0008789	miRNA gene	Chr6:76552839-76552969 (+)
DBA/2J	MGP_DBA2J_G0008821	miRNA gene	Chr6:68356169-68356299 (+)
FVB/NJ	MGP_FVBNJ_G0008838	miRNA gene	Chr6:67727083-67727210 (+)
LP/J	MGP_LPJ_G0008913	miRNA gene	Chr6:71668756-71668886 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0009089	miRNA gene	Chr6:70805397-70805527 (+)
PWK/PhJ	MGP_PWKPhJ_G0008590	miRNA gene	Chr6:67229834-67229964 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008435	miRNA gene	Chr6:69519171-69519307 (+)
WSB/EiJ	MGP_WSBEiJ_G0008758	miRNA gene	Chr6:71148510-71148640 (+)

Homology

• Gene Tree
  Mir8112
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000098623 (Evidence)
• NCBI Gene
  102465900

Representative Sequences			Length	Strain/Species
genomic	102465900	NCBI Gene Model | MGI Sequence Detail	131	C57BL/6J
transcript	NR_106192	RefSeq | MGI Sequence Detail	131	ZRU/MplStud

Other Database
Links

miRBase

MI0026044

References

• Summaries
  All 4
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir8112:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56988	Chr6:71247858-71247913 (+)	-769 bp
Tssr56989	Chr6:71248559-71248590 (+)	-80 bp