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Mir6540 Gene Detail
Summary
  • Symbol
    Mir6540
  • Name
    microRNA 6540
  • Synonyms
    mmu-mir-6540
Location &
Maps
more
  • Sequence Map
    Chr16:42123725-42123832 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    140 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5531162
 miRNA gene Chr16:42123725-42123832 (-)
129S1/SvImJ MGP_129S1SvImJ_G0008273
 miRNA gene Chr16:40982940-40983047 (-)
A/J MGP_AJ_G0008261
 miRNA gene Chr16:39076155-39076262 (-)
AKR/J MGP_AKRJ_G0008244
 miRNA gene Chr16:40405806-40405913 (-)
BALB/cJ MGP_BALBcJ_G0008246
 miRNA gene Chr16:39085794-39085901 (-)
C3H/HeJ MGP_C3HHeJ_G0008188
 miRNA gene Chr16:40552574-40552681 (-)
C57BL/6NJ MGP_C57BL6NJ_G0008440
 miRNA gene Chr16:41922789-41922896 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0007504
 miRNA gene Chr16:39239183-39239290 (-)
CAST/EiJ MGP_CASTEiJ_G0008058
 miRNA gene Chr16:40758456-40758563 (-)
CBA/J MGP_CBAJ_G0008157
 miRNA gene Chr16:43716614-43716721 (-)
DBA/2J MGP_DBA2J_G0008190
 miRNA gene Chr16:38847810-38847917 (-)
FVB/NJ MGP_FVBNJ_G0008215
 miRNA gene Chr16:38829622-38829729 (-)
LP/J MGP_LPJ_G0008272
 miRNA gene Chr16:40672386-40672493 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0008178
 miRNA gene Chr16:43044157-43044264 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0008431
 miRNA gene Chr16:40391840-40391947 (-)
PWK/PhJ MGP_PWKPhJ_G0007979
 miRNA gene Chr16:39250248-39250355 (-)
SPRET/EiJ MGP_SPRETEiJ_G0007870
 miRNA gene Chr16:40315679-40315786 (-)
WSB/EiJ MGP_WSBEiJ_G0008136
 miRNA gene Chr16:40497023-40497130 (-)



Homology
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Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 102466172 NCBI Gene Model | MGI Sequence Detail 108 C57BL/6J ±  kb
transcript NR_105858 RefSeq | MGI Sequence Detail 108 ZRU/MplStud  
For the selected sequence
Other Database
Links
less
miRBase MI0022356
References
more
  • Summaries
    All 5
  • Earliest
    J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
  • Latest
    J:357102 Kuchen S, et al., Regulation of microRNA expression and abundance during lymphopoiesis. Immunity. 2010 Jun 25;32(6):828-39
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory