Gm28037 Gene Detail

Summary

• Symbol
  Gm28037
• Name
  predicted gene, 28037

• Feature Type
  lncRNA gene
• IDs
  MGI:5547773
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr16:55786706-55801084 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  426 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5547773	lncRNA gene	Chr16:55786706-55801084 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015320	unclassified non-coding RNA gene	Chr16:55060775-55076669 (+)
A/J	MGP_AJ_G0015295	unclassified non-coding RNA gene	Chr16:52697179-52712290 (+)
AKR/J	MGP_AKRJ_G0015258	unclassified non-coding RNA gene	Chr16:54363424-54379862 (+)
BALB/cJ	MGP_BALBcJ_G0015258	unclassified non-coding RNA gene	Chr16:52792939-52807881 (+)
C3H/HeJ	MGP_C3HHeJ_G0015082	unclassified non-coding RNA gene	Chr16:54549399-54567863 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015712	unclassified non-coding RNA gene	Chr16:56601527-56618221 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013454	unclassified non-coding RNA gene	Chr16:52416928-52433324 (+)
CAST/EiJ	MGP_CASTEiJ_G0014633	unclassified non-coding RNA gene	Chr16:54955700-54971041 (+)
CBA/J	MGP_CBAJ_G0015061	unclassified non-coding RNA gene	Chr16:58868586-58890983 (+)
DBA/2J	MGP_DBA2J_G0015156	unclassified non-coding RNA gene	Chr16:52446609-52465254 (+)
FVB/NJ	MGP_FVBNJ_G0015163	unclassified non-coding RNA gene	Chr16:52215497-52229586 (+)
LP/J	MGP_LPJ_G0015236	unclassified non-coding RNA gene	Chr16:54875469-54890906 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015189	unclassified non-coding RNA gene	Chr16:59183197-59199757 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015752	unclassified non-coding RNA gene	Chr16:54516469-54535730 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0014211	unclassified non-coding RNA gene	Chr16:54315701-54331676 (+)
WSB/EiJ	MGP_WSBEiJ_G0014740	unclassified non-coding RNA gene	Chr16:54545249-54560405 (+)

Homology

• Gene Tree
  Gm28037
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000098371 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098371	Ensembl Gene Model | MGI Sequence Detail	14379	C57BL/6J
transcript	ENSMUST00000122365	Ensembl | MGI Sequence Detail	611	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm28037:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138794	Chr16:55786657-55786697 (+)	-29 bp
Tssr138795	Chr16:55786701-55786734 (+)	12 bp
Tssr138796	Chr16:55786742-55786767 (+)	49 bp
Tssr138797	Chr16:55786775-55786793 (+)	78 bp
Tssr138798	Chr16:55787492-55787506 (+)	793 bp