Gm28039 Gene Detail

Summary

• Symbol
  Gm28039
• Name
  predicted gene, 28039

• Feature Type
  lncRNA gene
• IDs
  MGI:5547775
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr5:106705812-106844437 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2909 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5547775	lncRNA gene	Chr5:106705812-106844437 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015608	unclassified non-coding RNA gene	Chr5:108524143-108665143 (-)
A/J	MGP_AJ_G0015584	unclassified non-coding RNA gene	Chr5:104370111-104511944 (-)
AKR/J	MGP_AKRJ_G0015548	unclassified non-coding RNA gene	Chr5:107759473-107900785 (-)
BALB/cJ	MGP_BALBcJ_G0015546	unclassified non-coding RNA gene	Chr5:105517356-105657878 (-)
C3H/HeJ	MGP_C3HHeJ_G0015368	unclassified non-coding RNA gene	Chr5:108208476-108347166 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016000	unclassified non-coding RNA gene	Chr5:113028024-113170731 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013735	unclassified non-coding RNA gene	Chr5:99454097-99597093 (-)
CAST/EiJ	MGP_CASTEiJ_G0014924	unclassified non-coding RNA gene	Chr5:107104582-107253058 (-)
CBA/J	MGP_CBAJ_G0015349	unclassified non-coding RNA gene	Chr5:116796795-116942429 (-)
DBA/2J	MGP_DBA2J_G0015443	unclassified non-coding RNA gene	Chr5:104523837-104662480 (-)
FVB/NJ	MGP_FVBNJ_G0015450	unclassified non-coding RNA gene	Chr5:103245863-103385045 (-)
LP/J	MGP_LPJ_G0015524	unclassified non-coding RNA gene	Chr5:109104590-109243866 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015473	unclassified non-coding RNA gene	Chr5:121765958-121912268 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016042	unclassified non-coding RNA gene	Chr5:107290683-107431893 (-)
PWK/PhJ	MGP_PWKPhJ_G0014709	unclassified non-coding RNA gene	Chr5:103310882-103451779 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014497	unclassified non-coding RNA gene	Chr5:104812129-104949249 (-)
WSB/EiJ	MGP_WSBEiJ_G0015028	unclassified non-coding RNA gene	Chr5:107616954-107756333 (-)

Homology

• Gene Tree
  Gm28039
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm28039
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098302 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098302	Ensembl Gene Model | MGI Sequence Detail	138626	C57BL/6J
transcript	ENSMUST00000149128	Ensembl | MGI Sequence Detail	254	Not Applicable

References

• Summaries
  All 7

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm28039:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52350	Chr5:106844396-106844452 (-)	13 bp
Tssr52349	Chr5:106839008-106839024 (-)	5,421 bp
Tssr52348	Chr5:106828184-106828187 (-)	16,251 bp
Tssr52347	Chr5:106772276-106772283 (-)	72,157 bp
Tssr52346	Chr5:106772260-106772270 (-)	72,172 bp
Tssr52345	Chr5:106772220-106772227 (-)	72,213 bp
Tssr52344	Chr5:106762173-106762177 (-)	82,262 bp