Gm28042 Gene Detail

Summary

• Symbol
  Gm28042
• Name
  predicted gene, 28042

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5547778
  NCBI Gene: 102238433
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:119857974-119873514 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  338 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5547778	protein coding gene	Chr2:119857964-119873514 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0026357	protein coding gene	Chr2:122882456-122898080 (+)
A/J	MGP_AJ_G0026318	protein coding gene	Chr2:117846088-117861371 (+)
AKR/J	MGP_AKRJ_G0026297	protein coding gene	Chr2:121134275-121149648 (+)
BALB/cJ	MGP_BALBcJ_G0026331	protein coding gene	Chr2:118085302-118100585 (+)
C3H/HeJ	MGP_C3HHeJ_G0026077	protein coding gene	Chr2:121599914-121616418 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0026778	protein coding gene	Chr2:126893801-126909341 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0024158	protein coding gene	Chr2:112866590-112882028 (+)
CAST/EiJ	MGP_CASTEiJ_G0025539	protein coding gene	Chr2:121917668-121933048 (+)
CBA/J	MGP_CBAJ_G0026053	protein coding gene	Chr2:131326994-131344952 (+)
DBA/2J	MGP_DBA2J_G0026192	protein coding gene	Chr2:117234956-117250239 (+)
FVB/NJ	MGP_FVBNJ_G0026154	protein coding gene	Chr2:116069173-116085733 (+)
LP/J	MGP_LPJ_G0026293	protein coding gene	Chr2:123141179-123156553 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0026173	protein coding gene	Chr2:135640875-135656255 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0026833	protein coding gene	Chr2:121256439-121271815 (+)
PWK/PhJ	MGP_PWKPhJ_G0025275	protein coding gene	Chr2:116832607-116848334 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0025074	protein coding gene	Chr2:120452226-120469236 (+)
WSB/EiJ	MGP_WSBEiJ_G0025608	protein coding gene	Chr2:122098505-122113881 (+)

Homology

• Gene Tree
  Gm28042
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28042
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000033852 (Evidence)
• NCBI Gene
  102238433

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000033852	Ensembl Gene Model | MGI Sequence Detail	15541	C57BL/6J
transcript	ENSMUST00000129685	Ensembl | MGI Sequence Detail	4472	Not Applicable
polypeptide	ENSMUSP00000115498	Ensembl | MGI Sequence Detail	1014	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm28042:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19680	Chr2:119857962-119857990 (+)	2 bp
Tssr19681	Chr2:119858063-119858068 (+)	92 bp