Rdh16f1 Gene Detail

Summary

• Symbol
  Rdh16f1
• Name
  RDH16 family member 1
• Synonyms
  Gm28046

• Feature Type
  protein coding gene
• IDs
  MGI:5547782
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:127595656-127628563 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  814 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5547782	protein coding gene	Chr10:127595656-127628563 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017836	protein coding gene	Chr10:131391557-131448952 (+)
A/J	MGP_AJ_G0017813	protein coding gene	Chr10:126180975-126193942 (+)
AKR/J	MGP_AKRJ_G0017774	protein coding gene	Chr10:129851715-129906755 (+)
BALB/cJ	MGP_BALBcJ_G0017775	protein coding gene	Chr10:126533393-126566365 (+)
C3H/HeJ	MGP_C3HHeJ_G0017601	protein coding gene	Chr10:130059074-130065205 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018230	protein coding gene	Chr10:135838595-135876056 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015911	protein coding gene	Chr10:120203677-120216208 (+)
CAST/EiJ	MGP_CASTEiJ_G0017160	protein coding gene	Chr10:130749104-130765308 (+)
CBA/J	MGP_CBAJ_G0017568	protein coding gene	Chr10:141327444-141372711 (+)
DBA/2J	MGP_DBA2J_G0017674	protein coding gene	Chr10:125207185-125240853 (+)
FVB/NJ	MGP_FVBNJ_G0017669	protein coding gene	Chr10:124152161-124185096 (+)
LP/J	MGP_LPJ_G0017750	protein coding gene	Chr10:132036147-132042534 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017698	protein coding gene	Chr10:144019015-144029406 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018270	protein coding gene	Chr10:129932568-129969888 (+)
PWK/PhJ	MGP_PWKPhJ_G0016946	protein coding gene	Chr10:125486261-125494695 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rdh16f1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• UniProt
  1

• Ensembl
  ENSMUSG00000099009 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099009	Ensembl Gene Model | MGI Sequence Detail	32908	C57BL/6J
transcript	ENSMUST00000128247	Ensembl | MGI Sequence Detail	2766	Not Applicable
polypeptide	ENSMUSP00000116574	Ensembl | MGI Sequence Detail	317	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR036291 NAD(P)-binding domain superfamily
  IPR020904 Short-chain dehydrogenase/reductase, conserved site
  IPR002347 Short-chain dehydrogenase/reductase SDR

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rdh16f1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96256	Chr10:127595623-127595635 (+)	-27 bp
Tssr96257	Chr10:127595649-127595670 (+)	4 bp
Tssr96258	Chr10:127595674-127595685 (+)	24 bp