Mir6896 Gene Detail

Summary

• Symbol
  Mir6896
• Name
  microRNA 6896
• Synonyms
  mmu-mir-6896

• Feature Type
  miRNA gene
• IDs
  MGI:5562721
  NCBI Gene: 102466987
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:34156440-34156512 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5562721	miRNA gene	Chr1:34156440-34156512 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007604	miRNA gene	Chr1:32492126-32492198 (+)
A/J	MGP_AJ_G0007599	miRNA gene	Chr1:31719275-31719347 (+)
AKR/J	MGP_AKRJ_G0007573	miRNA gene	Chr1:32092252-32092324 (+)
BALB/cJ	MGP_BALBcJ_G0007575	miRNA gene	Chr1:31366330-31366402 (+)
C3H/HeJ	MGP_C3HHeJ_G0007522	miRNA gene	Chr1:32290558-32290630 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007750	miRNA gene	Chr1:33977040-33977112 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006926	miRNA gene	Chr1:28892107-28892179 (+)
CAST/EiJ	MGP_CASTEiJ_G0007422	miRNA gene	Chr1:32143677-32143749 (+)
CBA/J	MGP_CBAJ_G0007497	miRNA gene	Chr1:34917440-34917512 (+)
DBA/2J	MGP_DBA2J_G0007530	miRNA gene	Chr1:31046720-31046792 (+)
FVB/NJ	MGP_FVBNJ_G0007545	miRNA gene	Chr1:30591289-30591361 (+)
LP/J	MGP_LPJ_G0007612	miRNA gene	Chr1:32839641-32839713 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007520	miRNA gene	Chr1:37189407-37189479 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007751	miRNA gene	Chr1:32078981-32079053 (+)
PWK/PhJ	MGP_PWKPhJ_G0007355	miRNA gene	Chr1:30778918-30778990 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007259	miRNA gene	Chr1:32067325-32067397 (+)
WSB/EiJ	MGP_WSBEiJ_G0007486	miRNA gene	Chr1:32066084-32066156 (+)

Homology

• Gene Tree
  Mir6896
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir6896
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105982 (Evidence)
• NCBI Gene
  102466987

Representative Sequences			Length	Strain/Species
genomic	102466987	NCBI Gene Model | MGI Sequence Detail	73	C57BL/6J
transcript	NR_105861	RefSeq | MGI Sequence Detail	73	ZRU/MplStud

Other Database
Links

miRBase

MI0022743

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4