Lncppara Gene Detail

Summary

• Symbol
  Lncppara
• Name
  long noncoding RNA near Ppara
• Synonyms
  Lincppara, Mirlet7bhg

• Feature Type
  lncRNA gene
• IDs
  MGI:5568843
  NCBI Gene: 102800312
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr15:85530302-85591725 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic

Strain
Comparison

• SNPs within 2kb
  1417 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5568843	lncRNA gene	Chr15:85529788-85595393 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Lncppara
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  2 involving Lncppara
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  4

• Ensembl
  ENSMUSG00000116305 (Evidence)
• NCBI Gene
  102800312

Representative Sequences			Length	Strain/Species
genomic	102800312	NCBI Gene Model | MGI Sequence Detail	61424	C57BL/6J
transcript	NR_185126	RefSeq | MGI Sequence Detail	2216	ZRU/MplStud

Protein
Information

• EC
  102800312

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 16

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 10
• Earliest
  J:103253 Peters J, et al., Koala, Koa, is associated with an inversion on mouse Chromosome 15. Genet Res. 1992;59:237-8 (Abstract)
• Latest
  J:321899 Park H, et al., Non-coding RNA Neat1 and Abhd11os expressions are dysregulated in medium spiny neurons of Huntington disease model mice. Neurosci Res. 2019 Oct;147:58-63

TSS for Lncppara:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132525	Chr15:85529890-85529914 (+)	-400 bp
Tssr132526	Chr15:85530280-85530328 (+)	2 bp
Tssr132527	Chr15:85537751-85537805 (+)	7,476 bp
Tssr132528	Chr15:85538898-85538900 (+)	8,597 bp
Tssr132529	Chr15:85555194-85555220 (+)	24,905 bp
Tssr132530	Chr15:85555461-85555480 (+)	25,169 bp
Tssr132531	Chr15:85555675-85555712 (+)	25,392 bp
Tssr132532	Chr15:85555720-85555734 (+)	25,425 bp
Tssr132533	Chr15:85556010-85556017 (+)	25,712 bp
Tssr132534	Chr15:85556026-85556038 (+)	25,730 bp