Gm28100 Gene Detail

Summary

• Symbol
  Gm28100
• Name
  predicted gene 28100

• Feature Type
  lncRNA gene
• IDs
  MGI:5578806
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:85900087-85914639 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  580 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578806	lncRNA gene	Chr1:85900087-85914639 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004894	lincRNA gene	Chr1:87197428-87213207 (-)
A/J	MGP_AJ_G0004876	lincRNA gene	Chr1:83975784-83990423 (-)
AKR/J	MGP_AKRJ_G0004854	lincRNA gene	Chr1:86403699-86420095 (-)
BALB/cJ	MGP_BALBcJ_G0004857	lincRNA gene	Chr1:84092958-84108626 (-)
C3H/HeJ	MGP_C3HHeJ_G0004806	lincRNA gene	Chr1:86661200-86675789 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005008	lincRNA gene	Chr1:90525343-90543156 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004432	lincRNA gene	Chr1:78469304-78484085 (-)
CAST/EiJ	MGP_CASTEiJ_G0004757	lincRNA gene	Chr1:85894496-85909940 (-)
CBA/J	MGP_CBAJ_G0004798	lincRNA gene	Chr1:93340152-93357539 (-)
DBA/2J	MGP_DBA2J_G0004817	lincRNA gene	Chr1:83284140-83299120 (-)
FVB/NJ	MGP_FVBNJ_G0004837	lincRNA gene	Chr1:82329787-82344421 (-)
LP/J	MGP_LPJ_G0004895	lincRNA gene	Chr1:88312113-88327897 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004822	lincRNA gene	Chr1:96633170-96647520 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005012	lincRNA gene	Chr1:86529877-86544291 (-)
PWK/PhJ	MGP_PWKPhJ_G0004710	lincRNA gene	Chr1:82566256-82580495 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004635	lincRNA gene	Chr1:85515715-85530057 (-)
WSB/EiJ	MGP_WSBEiJ_G0004802	lincRNA gene	Chr1:86179611-86195738 (-)

Homology

• Gene Tree
  Gm28100
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28100
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100108 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100108	Ensembl Gene Model | MGI Sequence Detail	14553	C57BL/6J
transcript	ENSMUST00000186560	Ensembl | MGI Sequence Detail	582	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28100:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12749	Chr1:85914639-85914673 (-)	-17 bp