Gm28175 Gene Detail

Summary

• Symbol
  Gm28175
• Name
  predicted gene 28175

• Feature Type
  lncRNA gene
• IDs
  MGI:5578881
  NCBI Gene: 102640173
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:42298929-42343592 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  1244 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578881	lncRNA gene	Chr1:42296970-42349170 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004814	lincRNA gene	Chr1:41176755-41177153 (+)
A/J	MGP_AJ_G0004795	lincRNA gene	Chr1:39980951-39981349 (+)
AKR/J	MGP_AKRJ_G0004774	lincRNA gene	Chr1:40498974-40499372 (+)
BALB/cJ	MGP_BALBcJ_G0004777	lincRNA gene	Chr1:39632040-39632438 (+)
C3H/HeJ	MGP_C3HHeJ_G0004725	lincRNA gene	Chr1:40850895-40851293 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004927	lincRNA gene	Chr1:42894541-42894939 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004359	lincRNA gene	Chr1:36822497-36822897 (+)
CAST/EiJ	MGP_CASTEiJ_G0004681	lincRNA gene	Chr1:40810780-40811177 (+)
CBA/J	MGP_CBAJ_G0004718	lincRNA gene	Chr1:44158663-44159061 (+)
DBA/2J	MGP_DBA2J_G0004736	lincRNA gene	Chr1:39241414-39241812 (+)
FVB/NJ	MGP_FVBNJ_G0004756	lincRNA gene	Chr1:38777056-38777454 (+)
LP/J	MGP_LPJ_G0004815	lincRNA gene	Chr1:41520459-41520854 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004741	lincRNA gene	Chr1:46152404-46152802 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004931	lincRNA gene	Chr1:40666945-40667340 (+)
PWK/PhJ	MGP_PWKPhJ_G0004633	lincRNA gene	Chr1:39096250-39096648 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004560	lincRNA gene	Chr1:40672882-40673279 (+)
WSB/EiJ	MGP_WSBEiJ_G0004723	lincRNA gene	Chr1:40705925-40706323 (+)

Homology

• Gene Tree
  Gm28175
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm28175
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  21

• Ensembl
  ENSMUSG00000101299 (Evidence)
• NCBI Gene
  102640173

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101299	Ensembl Gene Model | MGI Sequence Detail	44664	C57BL/6J
transcript	ENSMUST00000244990	Ensembl | MGI Sequence Detail	1650	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Gm28175:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6506	Chr1:42298963-42298970 (+)	38 bp
Tssr6507	Chr1:42301083-42301129 (+)	2,177 bp