Gm28187 Gene Detail

Summary

• Symbol
  Gm28187
• Name
  predicted gene 28187

• Feature Type
  lncRNA gene
• IDs
  MGI:5578893
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:101820683-101822816 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  320 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578893	lncRNA gene	Chr1:101820683-101822816 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004931	lincRNA gene	Chr1:103833677-103835802 (-)
A/J	MGP_AJ_G0004913	lincRNA gene	Chr1:100277115-100279248 (-)
AKR/J	MGP_AKRJ_G0004890	lincRNA gene	Chr1:102969467-102971600 (-)
BALB/cJ	MGP_BALBcJ_G0004894	lincRNA gene	Chr1:100327787-100329920 (-)
C3H/HeJ	MGP_C3HHeJ_G0004843	lincRNA gene	Chr1:103400691-103402824 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005044	lincRNA gene	Chr1:107874724-107876857 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004792	lincRNA gene	Chr1:102387926-102390059 (-)
CBA/J	MGP_CBAJ_G0004835	lincRNA gene	Chr1:111543509-111545642 (-)
DBA/2J	MGP_DBA2J_G0004854	lincRNA gene	Chr1:99332739-99334864 (-)
FVB/NJ	MGP_FVBNJ_G0004873	lincRNA gene	Chr1:98316749-98318882 (-)
LP/J	MGP_LPJ_G0004932	lincRNA gene	Chr1:105096463-105098588 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004858	lincRNA gene	Chr1:115605454-115607579 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005049	lincRNA gene	Chr1:103074760-103076893 (-)
PWK/PhJ	MGP_PWKPhJ_G0004745	lincRNA gene	Chr1:98489106-98491239 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004670	lincRNA gene	Chr1:101886327-101888445 (-)
WSB/EiJ	MGP_WSBEiJ_G0004839	lincRNA gene	Chr1:102911857-102913990 (-)

Homology

• Gene Tree
  Gm28187
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28187
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000099375 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099375	Ensembl Gene Model | MGI Sequence Detail	2134	C57BL/6J
transcript	ENSMUST00000186885	Ensembl | MGI Sequence Detail	2134	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28187:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13119	Chr1:101823587-101823634 (-)	-795 bp