Gm28209 Gene Detail

Summary

• Symbol
  Gm28209
• Name
  predicted gene 28209

• Feature Type
  lncRNA gene
• IDs
  MGI:5578915
  NCBI Gene: 102636940
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:119830860-119834627 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  194 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5578915	lncRNA gene	Chr1:119830320-119846243 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004947	lincRNA gene	Chr1:122677542-122681275 (+)
A/J	MGP_AJ_G0004929	lincRNA gene	Chr1:118279913-118283613 (+)
AKR/J	MGP_AKRJ_G0004906	lincRNA gene	Chr1:121767126-121770809 (+)
BALB/cJ	MGP_BALBcJ_G0004910	lincRNA gene	Chr1:118540687-118544366 (+)
C3H/HeJ	MGP_C3HHeJ_G0004859	lincRNA gene	Chr1:121926166-121934241 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005061	lincRNA gene	Chr1:127349471-127355990 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004478	lincRNA gene	Chr1:111930431-111935070 (+)
CAST/EiJ	MGP_CASTEiJ_G0004808	lincRNA gene	Chr1:120711992-120715975 (+)
CBA/J	MGP_CBAJ_G0004851	lincRNA gene	Chr1:131757143-131763704 (+)
DBA/2J	MGP_DBA2J_G0004870	lincRNA gene	Chr1:117302030-117306416 (+)
FVB/NJ	MGP_FVBNJ_G0004889	lincRNA gene	Chr1:116052805-116056940 (+)
LP/J	MGP_LPJ_G0004948	lincRNA gene	Chr1:124017367-124023786 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004874	lincRNA gene	Chr1:137511937-137515610 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005065	lincRNA gene	Chr1:121476480-121480164 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0004685	lincRNA gene	Chr1:120364703-120372446 (+)
WSB/EiJ	MGP_WSBEiJ_G0004855	lincRNA gene	Chr1:121359567-121364772 (+)

Homology

• Gene Tree
  Gm28209
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28209
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000101224 (Evidence)
• NCBI Gene
  102636940

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101224	Ensembl Gene Model | MGI Sequence Detail	3768	C57BL/6J
transcript	ENSMUST00000187956	Ensembl | MGI Sequence Detail	775	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28209:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr183	Chr1:119834567-119834572 (+)	3,710 bp