Gm28323 Gene Detail

Summary

• Symbol
  Gm28323
• Name
  predicted gene 28323

• Feature Type
  lncRNA gene
• IDs
  MGI:5579029
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:51916269-51918767 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579029	lncRNA gene	Chr1:51916269-51918767 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036861	sense intronic lncRNA gene	Chr1:51376780-51379278 (-)
A/J	MGP_AJ_G0036849	sense intronic lncRNA gene	Chr1:49655516-49658014 (-)
AKR/J	MGP_AKRJ_G0036798	sense intronic lncRNA gene	Chr1:50701524-50704023 (-)
BALB/cJ	MGP_BALBcJ_G0036840	sense intronic lncRNA gene	Chr1:49469497-49471995 (-)
C3H/HeJ	MGP_C3HHeJ_G0036525	sense intronic lncRNA gene	Chr1:51101375-51103873 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037353	sense intronic lncRNA gene	Chr1:53553026-53555524 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034414	sense intronic lncRNA gene	Chr1:42204371-42206867 (+)
CAST/EiJ	MGP_CASTEiJ_G0035715	sense intronic lncRNA gene	Chr1:50580770-50583275 (-)
CBA/J	MGP_CBAJ_G0036501	sense intronic lncRNA gene	Chr1:54970036-54972534 (-)
DBA/2J	MGP_DBA2J_G0036677	sense intronic lncRNA gene	Chr1:48910842-48913340 (-)
FVB/NJ	MGP_FVBNJ_G0036629	sense intronic lncRNA gene	Chr1:48374597-48377095 (-)
LP/J	MGP_LPJ_G0036724	sense intronic lncRNA gene	Chr1:51857788-51860286 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036634	sense intronic lncRNA gene	Chr1:58003229-58005727 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037469	sense intronic lncRNA gene	Chr1:50829621-50832119 (-)
PWK/PhJ	MGP_PWKPhJ_G0035408	sense intronic lncRNA gene	Chr1:48787003-48789496 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035223	sense intronic lncRNA gene	Chr1:50484395-50486901 (-)
WSB/EiJ	MGP_WSBEiJ_G0035917	sense intronic lncRNA gene	Chr1:50643188-50645686 (-)

Homology

• Gene Tree
  Gm28323
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28323
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100313 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100313	Ensembl Gene Model | MGI Sequence Detail	2499	C57BL/6J
transcript	ENSMUST00000186817	Ensembl | MGI Sequence Detail	2499	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28323:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11582	Chr1:51918580-51918605 (-)	174 bp