Gm28364 Gene Detail

Summary

• Symbol
  Gm28364
• Name
  predicted gene 28364

• Feature Type
  lncRNA gene
• IDs
  MGI:5579070
  NCBI Gene: 108167628
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:74320320-74321025 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579070	lncRNA gene	Chr1:74320320-74321873 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002700	antisense lncRNA gene	Chr1:74869106-74869811 (+)
A/J	MGP_AJ_G0002676	antisense lncRNA gene	Chr1:72248186-72248891 (+)
AKR/J	MGP_AKRJ_G0002656	antisense lncRNA gene	Chr1:74259869-74260574 (+)
BALB/cJ	MGP_BALBcJ_G0002662	antisense lncRNA gene	Chr1:72321340-72322045 (+)
C3H/HeJ	MGP_C3HHeJ_G0002622	antisense lncRNA gene	Chr1:74587549-74588254 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002806	antisense lncRNA gene	Chr1:77776579-77777284 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002353	antisense lncRNA gene	Chr1:67833161-67833868 (+)
CAST/EiJ	MGP_CASTEiJ_G0002594	antisense lncRNA gene	Chr1:73899426-73900131 (+)
CBA/J	MGP_CBAJ_G0002617	antisense lncRNA gene	Chr1:80297656-80298361 (+)
DBA/2J	MGP_DBA2J_G0002622	antisense lncRNA gene	Chr1:71585354-71586059 (+)
FVB/NJ	MGP_FVBNJ_G0002642	antisense lncRNA gene	Chr1:70759450-70760155 (+)
LP/J	MGP_LPJ_G0002702	antisense lncRNA gene	Chr1:75970251-75970956 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002632	antisense lncRNA gene	Chr1:83721220-83721925 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002811	antisense lncRNA gene	Chr1:74317580-74318285 (+)
PWK/PhJ	MGP_PWKPhJ_G0002552	antisense lncRNA gene	Chr1:71027678-71028376 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002506	antisense lncRNA gene	Chr1:73682071-73682776 (+)
WSB/EiJ	MGP_WSBEiJ_G0002624	antisense lncRNA gene	Chr1:74121244-74121949 (+)

Homology

• Gene Tree
  Gm28364
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28364
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101503 (Evidence)
• NCBI Gene
  108167628

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101503	Ensembl Gene Model | MGI Sequence Detail	706	C57BL/6J
transcript	ENSMUST00000187908	Ensembl | MGI Sequence Detail	334	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28364:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7371	Chr1:74320315-74320335 (+)	5 bp
Tssr7372	Chr1:74320341-74320361 (+)	31 bp
Tssr7373	Chr1:74320373-74320382 (+)	58 bp
Tssr7374	Chr1:74320384-74320387 (+)	66 bp