Gm28535 Gene Detail

Summary

• Symbol
  Gm28535
• Name
  predicted gene 28535

• Feature Type
  lncRNA gene
• IDs
  MGI:5579241
  NCBI Gene: 105246665
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:93233686-93245034 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579241	lncRNA gene	Chr1:93233673-93245034 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002723	antisense lncRNA gene	Chr1:94923973-94935308 (+)
A/J	MGP_AJ_G0002699	antisense lncRNA gene	Chr1:91523900-91535235 (+)
AKR/J	MGP_AKRJ_G0002680	antisense lncRNA gene	Chr1:94224742-94236077 (+)
BALB/cJ	MGP_BALBcJ_G0002686	antisense lncRNA gene	Chr1:91705455-91716790 (+)
C3H/HeJ	MGP_C3HHeJ_G0002645	antisense lncRNA gene	Chr1:94479318-94490655 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002829	antisense lncRNA gene	Chr1:98536446-98549651 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002377	antisense lncRNA gene	Chr1:85772746-85790347 (+)
CAST/EiJ	MGP_CASTEiJ_G0002617	antisense lncRNA gene	Chr1:93808732-93821940 (+)
CBA/J	MGP_CBAJ_G0002640	antisense lncRNA gene	Chr1:101727124-101738461 (+)
DBA/2J	MGP_DBA2J_G0002646	antisense lncRNA gene	Chr1:90719212-90730547 (+)
FVB/NJ	MGP_FVBNJ_G0002666	antisense lncRNA gene	Chr1:89793717-89805052 (+)
LP/J	MGP_LPJ_G0002725	antisense lncRNA gene	Chr1:96102834-96114106 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002656	antisense lncRNA gene	Chr1:104836164-104847499 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002834	antisense lncRNA gene	Chr1:94241669-94253014 (+)
PWK/PhJ	MGP_PWKPhJ_G0002575	antisense lncRNA gene	Chr1:90157138-90168755 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002527	antisense lncRNA gene	Chr1:93192846-93205592 (+)
WSB/EiJ	MGP_WSBEiJ_G0002647	antisense lncRNA gene	Chr1:94060619-94073166 (+)

Homology

• Gene Tree
  Gm28535
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28535
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101172 (Evidence)
• NCBI Gene
  105246665

Representative Sequences			Length	Strain/Species
genomic	105246665	NCBI Gene Model | MGI Sequence Detail	11349	C57BL/6J
transcript	NR_151531	RefSeq | MGI Sequence Detail	888	ZRU/MplStud

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm28535:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8168	Chr1:93233666-93233683 (+)	-11 bp