Gm28536 Gene Detail

Summary

• Symbol
  Gm28536
• Name
  predicted gene 28536

• Feature Type
  lncRNA gene
• IDs
  MGI:5579242
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:93562915-93564231 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579242	lncRNA gene	Chr1:93562915-93564231 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002724	antisense lncRNA gene	Chr1:95272654-95273969 (+)
A/J	MGP_AJ_G0002700	antisense lncRNA gene	Chr1:91858405-91859720 (+)
AKR/J	MGP_AKRJ_G0002681	antisense lncRNA gene	Chr1:94568244-94569559 (+)
BALB/cJ	MGP_BALBcJ_G0002687	antisense lncRNA gene	Chr1:92038316-92039631 (+)
C3H/HeJ	MGP_C3HHeJ_G0002646	antisense lncRNA gene	Chr1:94824263-94825579 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002830	antisense lncRNA gene	Chr1:98892114-98893430 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002378	antisense lncRNA gene	Chr1:86103525-86104863 (+)
CAST/EiJ	MGP_CASTEiJ_G0002618	antisense lncRNA gene	Chr1:94156759-94158076 (+)
CBA/J	MGP_CBAJ_G0002641	antisense lncRNA gene	Chr1:102095276-102096592 (+)
DBA/2J	MGP_DBA2J_G0002647	antisense lncRNA gene	Chr1:91065894-91067209 (+)
FVB/NJ	MGP_FVBNJ_G0002667	antisense lncRNA gene	Chr1:90125710-90127025 (+)
LP/J	MGP_LPJ_G0002726	antisense lncRNA gene	Chr1:96449605-96450920 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002657	antisense lncRNA gene	Chr1:105188590-105189905 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002835	antisense lncRNA gene	Chr1:94587498-94588814 (+)
PWK/PhJ	MGP_PWKPhJ_G0002576	antisense lncRNA gene	Chr1:90490831-90492134 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003976	antisense lncRNA gene	Chr5:136885597-136886912 (+)
WSB/EiJ	MGP_WSBEiJ_G0002648	antisense lncRNA gene	Chr1:94409275-94410591 (+)

Homology

• Gene Tree
  Gm28536
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28536
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100927 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100927	Ensembl Gene Model | MGI Sequence Detail	1317	C57BL/6J
transcript	ENSMUST00000190971	Ensembl | MGI Sequence Detail	1317	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28536:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8187	Chr1:93562891-93562932 (+)	-3 bp