Gm28609 Gene Detail

Summary

• Symbol
  Gm28609
• Name
  predicted gene 28609

• Feature Type
  lncRNA gene
• IDs
  MGI:5579315
  NCBI Gene: 102633532
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:132986683-132996164 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  330 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579315	lncRNA gene	Chr1:132974434-132996164 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002744	antisense lncRNA gene	Chr1:136561231-136579520 (-)
A/J	MGP_AJ_G0002720	antisense lncRNA gene	Chr1:131501539-131521375 (-)
AKR/J	MGP_AKRJ_G0002701	antisense lncRNA gene	Chr1:135366526-135392679 (-)
BALB/cJ	MGP_BALBcJ_G0002707	antisense lncRNA gene	Chr1:131835524-131853834 (-)
C3H/HeJ	MGP_C3HHeJ_G0002665	antisense lncRNA gene	Chr1:135511070-135529408 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002850	antisense lncRNA gene	Chr1:141635714-141655957 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002397	antisense lncRNA gene	Chr1:124660709-124678672 (-)
CAST/EiJ	MGP_CASTEiJ_G0002638	antisense lncRNA gene	Chr1:134533605-134551861 (-)
CBA/J	MGP_CBAJ_G0002661	antisense lncRNA gene	Chr1:146456197-146477040 (-)
DBA/2J	MGP_DBA2J_G0002667	antisense lncRNA gene	Chr1:130462666-130483015 (-)
FVB/NJ	MGP_FVBNJ_G0002687	antisense lncRNA gene	Chr1:129111682-129130315 (-)
LP/J	MGP_LPJ_G0002745	antisense lncRNA gene	Chr1:137880580-137898933 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002677	antisense lncRNA gene	Chr1:152237704-152255991 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002855	antisense lncRNA gene	Chr1:135124819-135143138 (-)
PWK/PhJ	MGP_PWKPhJ_G0002595	antisense lncRNA gene	Chr1:129468694-129487277 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002547	antisense lncRNA gene	Chr1:134079903-134099611 (-)
WSB/EiJ	MGP_WSBEiJ_G0002667	antisense lncRNA gene	Chr1:135126892-135145215 (-)

Homology

• Gene Tree
  Gm28609
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28609
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000101102 (Evidence)
• NCBI Gene
  102633532

Representative Sequences			Length	Strain/Species
genomic	102633532	NCBI Gene Model | MGI Sequence Detail	9482	C57BL/6J
transcript	KY467509	GenBank | ENA | DDBJ | MGI Sequence Detail	293	ZRU/MplStud

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm28609:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13678	Chr1:132996132-132996136 (-)	30 bp