Gm28635 Gene Detail

Summary

• Symbol
  Gm28635
• Name
  predicted gene 28635

• Feature Type
  protein coding gene
• IDs
  MGI:5579341
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:84431783-84508385 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  1399 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579341	protein coding gene	Chr2:84431783-84508385 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0025901	protein coding gene	Chr2:85283341-85359657 (-)
A/J	MGP_AJ_G0025875	protein coding gene	Chr2:81977463-82063088 (-)
AKR/J	MGP_AKRJ_G0025845	protein coding gene	Chr2:84091432-84173165 (-)
BALB/cJ	MGP_BALBcJ_G0025872	protein coding gene	Chr2:82115008-82194795 (-)
C3H/HeJ	MGP_C3HHeJ_G0025631	protein coding gene	Chr2:84340456-84420579 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0026318	protein coding gene	Chr2:87924821-88010363 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023720	protein coding gene	Chr2:78812124-78888734 (-)
CAST/EiJ	MGP_CASTEiJ_G0025092	protein coding gene	Chr2:84853305-84941821 (-)
CBA/J	MGP_CBAJ_G0025612	protein coding gene	Chr2:91069319-91157128 (-)
DBA/2J	MGP_DBA2J_G0025743	protein coding gene	Chr2:81524340-81601528 (-)
FVB/NJ	MGP_FVBNJ_G0025706	protein coding gene	Chr2:80765495-80852708 (-)
LP/J	MGP_LPJ_G0025831	protein coding gene	Chr2:85081710-85162976 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0025736	protein coding gene	Chr2:93381553-93476901 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0026374	protein coding gene	Chr2:84320125-84402764 (-)
PWK/PhJ	MGP_PWKPhJ_G0024836	protein coding gene	Chr2:81356420-81439146 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0024640	protein coding gene	Chr2:84474458-84554461 (-)
WSB/EiJ	MGP_WSBEiJ_G0025162	protein coding gene	Chr2:84996781-85082509 (-)

Homology

• Gene Tree
  Gm28635
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Targeted
  1
• Genomic Mutations
  2 involving Gm28635
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000101645 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101645	Ensembl Gene Model | MGI Sequence Detail	76603	C57BL/6J
transcript	ENSMUST00000189772	Ensembl | MGI Sequence Detail	4734	Not Applicable
polypeptide	ENSMUSP00000141166	Ensembl | MGI Sequence Detail	938	Not Applicable

References

• Summaries
  All 9

  Phenotypes 7
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm28635:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25024	Chr2:84508395-84508427 (-)	-26 bp